ggKbase home page

SCN18_13_7_16_R5_B_scaffold_5016_3

Organism: SCN18_13_7_16_R5_Bosea_sp_LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15_67_8

near complete RP 45 / 55 MC: 5 BSCG 47 / 51 MC: 6 ASCG 10 / 38 MC: 2
Location: comp(1577..2230)

Top 3 Functional Annotations

Value Algorithm Source
choline ABC transporter permease n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B322A2 similarity UNIREF
DB: UNIREF100
  • Identity: 74.1
  • Coverage: 216.0
  • Bit_score: 332
  • Evalue 3.10e-88
L-proline glycine betaine ABC transport system permease protein ProW {ECO:0000313|EMBL:EKV31865.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.9
  • Coverage: 216.0
  • Bit_score: 318
  • Evalue 3.80e-84
ABC-type transporter, integral membrane subunit similarity KEGG
DB: KEGG
  • Identity: 72.0
  • Coverage: 214.0
  • Bit_score: 312
  • Evalue 7.10e-83

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 → Bosea → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 654
ATGGACATTCTCAATTACATCATTTCGAACTGGGGGCTCATCGTCACCCGGACTGGCGAACACGTTGCCATCGTCGGGGTCGCGGTTGCGCTGGCCATTCTGACCGGCGTGCCGATCGGCGTGGCGATCAGCCAGAACCGACGCGTGGCGGACGCCGTGCTCTATGTGGCGTCGATGGTGATCACCATCCCGTCGATCGCATTGTTCGGGATGATGATCCCGGTCCTGTCGCTGGTCGGCCACGGGATCGGCTACCTTCCGGCGGTGATTGCGGTATTACTCTACTCGCAGCTGCCGATTATCCGGAATACATACGCCGCGATCCGCAATCTTGATCCGGCCCTGCGAGAAGCTGCGCGAGGCATGGGCTTGACCAGAGGCCAGCGCTTGCGGGAGGTCGAGCTACCGCTCGCACTGCCGGTGATCATGACCGGGGTGCGGCTCGCAGTGGTGATGAATATCGGCGTGACCGCGATCGCCGCCTATATCGGCGCCGGCGGGCTGGGAACCTTCATCTCGCGGGGCATCAGCCAGACCGATCCGCGCCAGCTCATCACCGGAGCCCTCGCCGTCAGCCTGCTCGCCATCGTCGCCGACCTCGCCCTGCTGTGGCTGCAGCGGAAGCTCACCTCTCCGGGACTGAGGACCAGATGA
PROTEIN sequence
Length: 218
MDILNYIISNWGLIVTRTGEHVAIVGVAVALAILTGVPIGVAISQNRRVADAVLYVASMVITIPSIALFGMMIPVLSLVGHGIGYLPAVIAVLLYSQLPIIRNTYAAIRNLDPALREAARGMGLTRGQRLREVELPLALPVIMTGVRLAVVMNIGVTAIAAYIGAGGLGTFISRGISQTDPRQLITGALAVSLLAIVADLALLWLQRKLTSPGLRTR*