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SCN18_13_7_16_R5_B_scaffold_3065_7

Organism: SCN18_13_7_16_R5_Bosea_sp_LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15_67_8

near complete RP 45 / 55 MC: 5 BSCG 47 / 51 MC: 6 ASCG 10 / 38 MC: 2
Location: comp(3495..4055)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07Q94_RHOP5 similarity UNIREF
DB: UNIREF100
  • Identity: 65.6
  • Coverage: 180.0
  • Bit_score: 239
  • Evalue 1.80e-60
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 65.6
  • Coverage: 180.0
  • Bit_score: 239
  • Evalue 5.00e-61
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABJ05890.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.6
  • Coverage: 180.0
  • Bit_score: 239
  • Evalue 2.50e-60

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Taxonomy

Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 → Bosea → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 561
ATGAACTTGTCGCTGCGCGAACATGACTGGGCCATGTGGCTCCGCTTGGCCATGGCTGGCGATGCGGATGCCTATCGACGATTTCTGCAGGCAATCGCCCCGTTCGTCAGAACGGTCGTCCGTTCCGGCTGCCGTGGCTCGGGAAACGGAAGCGAGATCGAGGACGTCGTGCAGGAAGCGTTGCTGGCCATCCATCTCAAGCGCGGGACCTGGGATCCCGCGCGGCCGGTCGTGCCTTGGATCGCAGCGATCGCCCGGCACAAGCTCATCGATGCGATGCGCAGGCGAGGACGGCATGTCAGCGTTCCGATCGAGGATGTCGCGGATCGTCTGCCGCTCGACGACACTGCGCCGGAGCTCAGTGCGAGTGAGATCGACAGGCTGCTTGCAGAGCTCAAGCCGGCGCAGGAAGAGATTGTCCGGTCGATCTCGATCGAAGGCGTCTCCATCCGGGAAACGGCCGGACGCTTGCGAATGACGGAAGGGGCGGTCCGCGTCGCCCTGCATCGCGCGCTCAAGACGCTGGGCGCGCTTTATCGGGATCGCTCACGTGAAGACTGA
PROTEIN sequence
Length: 187
MNLSLREHDWAMWLRLAMAGDADAYRRFLQAIAPFVRTVVRSGCRGSGNGSEIEDVVQEALLAIHLKRGTWDPARPVVPWIAAIARHKLIDAMRRRGRHVSVPIEDVADRLPLDDTAPELSASEIDRLLAELKPAQEEIVRSISIEGVSIRETAGRLRMTEGAVRVALHRALKTLGALYRDRSRED*