ggKbase home page

SCN18_13_7_16_R5_B_scaffold_15365_1

Organism: SCN18_13_7_16_R5_Bosea_sp_LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15_67_8

near complete RP 45 / 55 MC: 5 BSCG 47 / 51 MC: 6 ASCG 10 / 38 MC: 2
Location: 3..293

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.5
  • Coverage: 96.0
  • Bit_score: 176
  • Evalue 1.00e-41
tRNA pseudouridine synthase A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGC8_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 65.6
  • Coverage: 96.0
  • Bit_score: 139
  • Evalue 9.80e-31
tRNA pseudouridine synthase A similarity KEGG
DB: KEGG
  • Identity: 65.6
  • Coverage: 96.0
  • Bit_score: 139
  • Evalue 2.80e-31

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 → Bosea → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 291
GGCCAGCATGATTTCACGACCTTCCGCGCCGCCGAGTGCCAGGCCAACAGCCCGATCCGCACGCTCGACCGGCTCGATGTCCGGCGCGAAGGCAGCGAGATCGTGGTCTATACGCACGCTCGCTCCTTTCTGCACCACCAGGTCCGCTCCATCGTCGGCTCCCTGAAGATGGTTGGCGCCGGGCGCTGGCCGGAAGATCGGATGGGGCAGGTCCTGGCCGCCCGCGACCGCTCGCAATGCGCGGCGTTGGCGCCTTCCAGCGGGCTCTATCTGGCCGGCGTCGACTACTGA
PROTEIN sequence
Length: 97
GQHDFTTFRAAECQANSPIRTLDRLDVRREGSEIVVYTHARSFLHHQVRSIVGSLKMVGAGRWPEDRMGQVLAARDRSQCAALAPSSGLYLAGVDY*