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SCN18_10_11_15_R4_B_scaffold_309_3

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial_69_13

near complete RP 51 / 55 BSCG 51 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: 606..1865

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-subfamily sigma-70 factor n=1 Tax=Pseudomonas aeruginosa X24509 RepID=U9C1U2_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 67.6
  • Coverage: 410.0
  • Bit_score: 517
  • Evalue 7.60e-144
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KKB11690.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.6
  • Coverage: 404.0
  • Bit_score: 518
  • Evalue 4.80e-144
putative RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 65.9
  • Coverage: 405.0
  • Bit_score: 516
  • Evalue 4.80e-144

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Taxonomy

SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52 → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1260
ATGACAGGCGAGGCGGCGCGGGCGGTCGAGGATGCATGGCGCATCCATTCGCGCCGGGTGCTCGCGACGCTGATCCGCCTGCTCGGCGATTTCGACCTCGCCGAGGAGGCGCTGCACGAGGCTTTCCTGGCTGCCTCGCGGCAGTGGCCGGAAGCCGGCGTGCCGGCCAACCCGCGCGCCTGGCTGGTCTCGGCCGGGCGGTTCAGGGCGATCGACCGGCTGCGCCGGCGCGCGCGCTTTGCCGCCGCGGTGCCCGACATCGCGGAGGAGCTGCACGGCGAGGGGCTGGCCATGCCTGACGAGGACGATCCGGCGATCGCCGACGACCGGCTGCGGCTGATTTTCACCTGCTGCCACCCGGCGATCGCGCCGGAGGCGCAGGTGGCGCTGACGCTGCGCGAGCTGTGCGGCCTGACCACCGGGGAGATCGCGCGCGCCTTCCTCGCCGCCACGCCCGCCGTCGCGCAGCGCATCGTGCGGGCCAAGGCGAAGATCCGCGAGGCCCGCATCCCCTATGCCGTGCCGGAGGGGCCGGAGCTGCCGCAGCGGCTCGAATCGGTGCTGCGCGTCGTCTACCTCGTCTTCAACGAGGGCTATTCCGCCCATTTCGGGGCCTCGCTCACGCGCGCCGACCTTTCCGGCGAGGCGATCCGGCTCGGGCGGCTGATGGTCGAGCTGATGCCGGACGCCGAGACCTTCGGGCTTTTGGCGCTGATGCTGCTCAACGAATCGCGCCGCGCGGCCCGGCTGTCGGAGGCGGGCGAGATCGTGCTGCTGCCCGACCAGGACCGCGCCCTGTGGGACAGCGCGCTGACCGGCGAGGGCGCGGTGCTGGTCGAGCGCGCCTTCGCCACCGGCGAGGTCGGGTCCTACGCGATCCAGGCGGCGATCTCGGCCGTGCACGCGGCCGCGCGGACGGCGGAGGCGACGGACTGGCGGCGGATCGTCTTGCTCTACGACATGCTGCTCGATGCGGCGCCGTCGCCGGTCGTGCGGCTCAACCGGGCCGTCGCGGTCGGCATGGCCGACGGGCCGGAGGCGGGGCTGGCGGCGGTCGAGGAGATCGCCGCGGCGGGCGGGCTGGACGGCTATCACCTGCTGCACGCGGCCCGCGCCGACATGCTGCGCCGCCTCGGCCGTCATGCCGGCGCGCAGGTCGCCTACGAGCGGGCGCTGGCGCTCTGCACAATGGAGCCGGAGCGGCGCTTTCTCCAGGGCCGCATCCGCGAGATGGCCGCGCTCGACGCCGCGGCCGGCTGA
PROTEIN sequence
Length: 420
MTGEAARAVEDAWRIHSRRVLATLIRLLGDFDLAEEALHEAFLAASRQWPEAGVPANPRAWLVSAGRFRAIDRLRRRARFAAAVPDIAEELHGEGLAMPDEDDPAIADDRLRLIFTCCHPAIAPEAQVALTLRELCGLTTGEIARAFLAATPAVAQRIVRAKAKIREARIPYAVPEGPELPQRLESVLRVVYLVFNEGYSAHFGASLTRADLSGEAIRLGRLMVELMPDAETFGLLALMLLNESRRAARLSEAGEIVLLPDQDRALWDSALTGEGAVLVERAFATGEVGSYAIQAAISAVHAAARTAEATDWRRIVLLYDMLLDAAPSPVVRLNRAVAVGMADGPEAGLAAVEEIAAAGGLDGYHLLHAARADMLRRLGRHAGAQVAYERALALCTMEPERRFLQGRIREMAALDAAAG*