ggKbase home page

SCN18_10_11_15_R4_B_scaffold_3987_4

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial_69_13

near complete RP 51 / 55 BSCG 51 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: comp(1194..1520)

Top 3 Functional Annotations

Value Algorithm Source
Integration host factor subunit alpha n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JR91_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 85.0
  • Coverage: 107.0
  • Bit_score: 177
  • Evalue 3.70e-42
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.0
  • Coverage: 107.0
  • Bit_score: 177
  • Evalue 5.20e-42
ihfA; integration host factor subunit alpha similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 100.0
  • Bit_score: 176
  • Evalue 2.30e-42

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial → SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 327
ATGGGGGGAAAGACGATCACGCGCGCCGATCTCGCCGAAGCCGTCTACCGTAAGGTAGGGCTGTCGCGCACCGAATCGTCCCAGCTCGTGGAAATGGTGCTCGACGAGATCTGCGGCGCCATCGTGCGCGGCGAGACCGTCAAGCTCTCCTCCTTCGCCACCTTCCAGGTCCGCTCCAAGAACGAGCGCATCGGCCGCAATCCCAAGACCGGCGAAGAAGTGCCGATCTCGCCGCGCCGGGTGATGACCTTCAAGGCCTCCAACGTCCTCAAGCAGCGCATCCTCGCCGCCCACCGGGCGGTCGTGGCCAAGGCCGCCAAGAAATAG
PROTEIN sequence
Length: 109
MGGKTITRADLAEAVYRKVGLSRTESSQLVEMVLDEICGAIVRGETVKLSSFATFQVRSKNERIGRNPKTGEEVPISPRRVMTFKASNVLKQRILAAHRAVVAKAAKK*