ggKbase home page

SCN18_10_11_15_R1_B_scaffold_1376_3

Organism: SCN18_10_11_15_R1_B_Rhizobiales_65_8

near complete RP 43 / 55 MC: 4 BSCG 44 / 51 MC: 3 ASCG 10 / 38
Location: comp(2860..3630)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.9
  • Coverage: 248.0
  • Bit_score: 353
  • Evalue 2.10e-94
tRNA pseudouridine synthase A n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD75_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 66.9
  • Coverage: 248.0
  • Bit_score: 353
  • Evalue 1.50e-94
tRNA pseudouridine synthase A similarity KEGG
DB: KEGG
  • Identity: 66.9
  • Coverage: 248.0
  • Bit_score: 353
  • Evalue 4.30e-95

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11 → SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11 → SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 771
ATGCCCCGCTACCGCATCACGATCGAATACGACGGCACGCCGTTCATCGGCTGGCAGATCCAGGCGGACGGGAAGTCCGTCCAAGGCAGCCTCGCGGAAGCCATCCACAAGCTCGGCGGCGAGACCGTCGAGGTGCGCGGCGCCGGCCGCACGGACGCGGGCGTGCACGCGCTCGGCCAGGTCGCGCATTTCGATCTCGTCAAGGAGTGGCCGGCGGACACGGTGCGCGACGCGGTGAACTTCCACCTGAAACCTGCGCCCATCACGATCCTCGACTGCGTGGTCATCGGCGATGGCTTCGACGCGCGTTCCAGCGCCGTAGCGCGGCATTACCTCTATCGCATTCTCGCCCGTCGCGCGCCGCCGGCCCTCGATCGGGATCGCGTGTGGTGGGTGCCGCGCCCACTCGATGCGTCCGCGATGGCGGCGGCCGCGCCGGCGCTTCTCGGTCGCCACGACTTCACGACGTTCCGCGCGGCCGGTTGTCAGGCGCGCTCGGCCGTCAAGACGCTCGATCGGCTCGACGTCACGGCTGTCGGCGACGAGATCCGCATCGAAGCTTCCGCGCGCTCGTTCCTGCATCATCAGGTGCGCTCGATCGTCGGCAGCCTGAAGCACGTCGGCGAAGGCAAATGGCCCGTGAGCGAGATGGCGGCCGCGCTTGCCGCCGCGGATCGCAGCCGCTGTGGCGCGCTCGCCCCGTCGAGCGGGCTCTATCTCGTACGCGTGGATTATCCGCCGGGGCCGTTCCCGCCACGTTCGCCGGAATAA
PROTEIN sequence
Length: 257
MPRYRITIEYDGTPFIGWQIQADGKSVQGSLAEAIHKLGGETVEVRGAGRTDAGVHALGQVAHFDLVKEWPADTVRDAVNFHLKPAPITILDCVVIGDGFDARSSAVARHYLYRILARRAPPALDRDRVWWVPRPLDASAMAAAAPALLGRHDFTTFRAAGCQARSAVKTLDRLDVTAVGDEIRIEASARSFLHHQVRSIVGSLKHVGEGKWPVSEMAAALAAADRSRCGALAPSSGLYLVRVDYPPGPFPPRSPE*