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SCN18_10_11_15_R1_P_scaffold_1053_1

Organism: SCN18_10_11_15_R1_P_Stenotrophomonas_69_7

near complete RP 45 / 55 MC: 3 BSCG 42 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: comp(1..3978)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.0
  • Coverage: 1326.0
  • Bit_score: 2458
  • Evalue 0.0
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 93.8
  • Coverage: 1326.0
  • Bit_score: 2457
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003818ECA similarity UNIREF
DB: UNIREF100
  • Identity: 94.0
  • Coverage: 1326.0
  • Bit_score: 2459
  • Evalue 0.0

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3978
ATGAAAGACCTGCTCAATCTCTTCAACCAGCAGCGCCAGACGCTGGACTTCGACGCGATCAAGATCGGCCTGGCTTCGCCGGACCTGATCCGCTCCTGGTCCTTCGGCGAGGTGAAGAAGCCGGAAACCATCAATTACCGCACCTTCAAGCCGGAACGCGACGGCCTGTTCTGCGCCGCCATCTTCGGCCCGGTGAAGGACTACGAGTGCCTGTGCGGCAAGTACAAGCGCATGAAGCACCGCGGCGTCGTGTGCGAGAAGTGCGGCACCGAAGTGACCCTGGCCAAGGTGCGCCGCGAGCGCATGGGCCATATCGACCTGGCTTCGCCGGTCGCCCACATCTGGTTCCTCAAGTCGCTGCCGTCGCGCATCGGCCTGATGCTGGACATGACCCTGCGCGACATCGAGCGCGTGCTGTACTTCGAAGCGTACGTGGTGACCGAGCCGGGCCTGACCGCCCTGGAGCGCCGCCAGCTGCTGACCGAAGAGCAGTACCTGCAGGCGCGCCAGGAGCACGGTGACGACTTCGACGCCGCCATGGGCGCCGAGGCCGTGTACGAACTGCTGCGCACCATCGACCTGCAGGCCGAAATGGTGAAGCTGCGCGAGGAAATCGCCTCCACCGGTTCGGAAACCAAGCTCAAGCGCCTGACCAAGCGCATCAAGCTGGTCGAAGCCTTCCTCGAGTCGGGCAACCGTCCGGAGTGGATGGTGATGACCGTGCTGCCGGTGCTGCCGCCGGATCTGCGCCCGCTGGTGCCGCTGGACGGTGGCCGCTTCGCGACCTCCGACCTGAACGATCTGTACCGCCGCGTCATCAACCGCAACAACCGCCTGCGCCGCCTGCTGGAGCTCAATGCTCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAATCGGTTGACGCCCTGCTGGACAACGGCCGCCGTGGCCGTGCCATCACCGGCACCAACAAGCGCCCGCTCAAGTCGCTGGCCGACATGATCAAGGGCAAGCAGGGTCGCTTCCGCCAGAACCTGCTCGGCAAGCGCGTCGACTACTCCGGCCGTTCGGTGATCACCGTCGGTCCGTACCTGAAGCTGCACCAGTGCGGCCTGCCGAAGAAGATGGCGCTGGAGCTGTTCAAGCCGTTCGTCTTCGCCAAGCTGCAGCGTCGTGGCCTGGCCACCACCATCAAGGCCGCCAAGAAGCTGGTCGAGCGCGAGGAAGGCGAAGTCTGGGACATCCTGGAAGAAGTCATCCGCGAGCATCCGGTGCTGCTGAACCGCGCGCCGACCCTGCACCGCCTCGGCATCCAGGCGTTCGAGCCGCTGCTGATCGAGGGCAAGGCCATCCAGCTGCACCCGCTGGTCTGCACCGCGTTCAACGCCGACTTCGACGGTGACCAGATGGCCGTCCACGTGCCGCTCTCGCTGGAAGCCCAGCTGGAAGCGCGCGCGCTGATGATGTCCACCAACAACATCCTGTCGCCGGCCAACGGCGAGCCGATCATCGTGCCGTCGCAGGACGTGGTGTTGGGCCTGTACTACCTCAGCCGTGCCCTGATCAACAAGAAGGGCGAGGGCATGGTGTTCGCCAACACCAACGAAGTGAAGCGCGCCTACGACAACCGCGTGGTCGAGCTGCACGCCCGGGTCAAGGTGCGCATCACCCAGGTCGAGCGCGACGAGCAGGGCAACAAGGTCAGCAAGACCTCGATCCAGGACACGACCGTCGGCCGTGCGCTGCTGAGCGAGATCATGCCCGAGGGCCTGCCGTTCGAGCTGTGCAACACCGAGATGACCAAGAAGAACATCTCGCGCCTGATCAACCAGAGCTACCGCCTGCTCGGCCTGAAGGACACCGTGGTGTTCGCCGACAAGCTGATGTACACCGGCTACGCCTACGCGACCCGCGCCGGCGTGTCGATCGGTATCGACGACATGCTCATCCCGGACGAGAAGAAGGGCATCCTGGGCGAAGCCGAGCAGGAAGTGCTGGAAATCCAGGAGCAGTACCAGTCGGGCCTGGTCACCGCCGGCGAGCGCTACAACAAGGTGGTCGACATCTGGTCGCGCACCAACGAGCGCATCGCCAAGGCGATGATGGAAACCATCGGTACCGAGAAGGTCGAGGACGGCGAGGGCAAGCTGGTCGACCAGAAGTCGATGAACTCGCTGTACATCATGGCCGACTCCGGCGCCCGTGGTAGCCAGGCGCAGATCCGCCAGCTGGCCGGCATGCGCGGCCTGATGGCCCGCCCGGACGGCTCGATCATCGAGACGCCCATCAAGGCGAACTTCCGCGAAGGCCTGAACGTGCAGGAGTACTTCAACTCCACCCACGGTGCCCGTAAGGGTCTGGCCGATACCGCGCTGAAGACCGCCAACTCCGGTTACCTGACCCGTCGCCTGGTCGACGTGGCGCAGGACGTGGTGATCACCGAAGTCGACTGCGGCACCGTCGAAGGCCTGACCATGACCCCGATCGTGGAAGGCGGCGACGTGGTCGAGCCGTTGAAGGACCGCGTGCTGGGCCGCGTCGTGGCCGAGGACGTGTTCCTGCCGGGCAACGACGAGGATCCGATCGTCACCCGCAACACGCTGCTCGACGAGCAGTGGGTGAACAAGCTGGAAGAAGCCGGCGTGCAGTCGATCAAGGTGCGCTCGACCATCACCTGCGAATCGGCCTTCGGCGTCTGCGGCCGCTGCTACGGCCGCGACCTGGCCCGTGGCCACATCGTCAACATCGGCGAAGCGGTCGGCGTCATCGCCGCGCAGTCGATCGGCGAGCCGGGTACCCAGCTGACCATGCGTACGTTCCACATCGGTGGTGCGGCATCGCGTGCGGCGGCGGTGGACAACATCACCGTCAAGACCACCGGTTCGGTCAAGTTCAACAACCTCAAGCACGCCGACCATGCCAACGGTTCGCTGGTGGCGGTGTCGCGTTCGGGCGAAGTGTCGGTGCTCGATGCCCACGGCCGCGAGCGCGAGCGCTACAAGCTGCCGTACGGCGCCACCATCACCGTCAAGGACGGCGCCGAGATCAAGGCTGGCCAGACCGTGGCCAACTGGGATCCGCATAACCACCCGATCGTGTCCGAAGTGGCCGGTTTCATCCGCTTCATCGACTTCGTCGACGGCATCACCGTCATCGAGAAGACCGATGAGCTGACCGGTCTGGCGTCGCGCGAAATCACCGATCCGAAGCGTCGTGGCTCGCAGGCCAAGGATCTGCGTCCGCTGGTCCGCATCGTCGATGGCAAGGGCAACGACCTGACCATCCCGGGCACCGACCTGCCGGCGCAGTACCTGCTGCCGCCGCGTTCGATCGTCAACCTGCAGGATGGCGCGCCGGTGGGCGTGGGCGACGTGGTCGCCAAGATCCCGCAGGAGGCGTCGAAGACCCGCGACATCACCGGTGGTCTGCCGCGCGTGGCCGACCTGTTCGAAGCGCGCAAGCCGAAGGATCCGGCGATCCTGGCCGAGCGTTCGGGCATCATCAGCTTCGCCAAGGACACCAAGGGCAAGCAGCGCCTGATCATCAAGGACACCGATGGTTCCGAGCACGAAGAGCTGATCCCGAAGTACCGCCAGATCATCGTGTTCGAAGGCGAGCACGTGACCCGCGGTGAAACCGTGGTGGACGGCGAGCCGAGCCCGCAGGACATCCTTCGCCTGAAGGGCGTGGAGGAACTGGCGCGCTACCTGGTCAAGGAAATCCAGGACGTGTACCGCCTGCAGGGCGTGAAGATCAACGACAAGCACATCGAGGTGATCTCGCGCCAGATGCTGCGCAAGGTCGAGATCGTCGACCAGGGCAGCAGCAAGTTCCTCAATGGCGAGCAGGCCGAGCGCCAGCGCGTGATCGAGGAAAACGCCAGGCTGGCGTCCCGCAACGAGCTGCCGGCCCGCTTCGAGCCGGTGCTGCTGGGCATCACCAAGGCTTCGCTGGCGACCGAGTCGTTCATCTCGGCGGCCTCGTTCCAG
PROTEIN sequence
Length: 1326
MKDLLNLFNQQRQTLDFDAIKIGLASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAAIFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAMGAEAVYELLRTIDLQAEMVKLREEIASTGSETKLKRLTKRIKLVEAFLESGNRPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEGEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYLSRALINKKGEGMVFANTNEVKRAYDNRVVELHARVKVRITQVERDEQGNKVSKTSIQDTTVGRALLSEIMPEGLPFELCNTEMTKKNISRLINQSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILGEAEQEVLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMETIGTEKVEDGEGKLVDQKSMNSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTVEGLTMTPIVEGGDVVEPLKDRVLGRVVAEDVFLPGNDEDPIVTRNTLLDEQWVNKLEEAGVQSIKVRSTITCESAFGVCGRCYGRDLARGHIVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVKFNNLKHADHANGSLVAVSRSGEVSVLDAHGRERERYKLPYGATITVKDGAEIKAGQTVANWDPHNHPIVSEVAGFIRFIDFVDGITVIEKTDELTGLASREITDPKRRGSQAKDLRPLVRIVDGKGNDLTIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFAKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTRGETVVDGEPSPQDILRLKGVEELARYLVKEIQDVYRLQGVKINDKHIEVISRQMLRKVEIVDQGSSKFLNGEQAERQRVIEENARLASRNELPARFEPVLLGITKASLATESFISAASFQ