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SCN18_10_11_15_R1_P_scaffold_3128_2

Organism: SCN18_10_11_15_R1_P_Stenotrophomonas_69_7

near complete RP 45 / 55 MC: 3 BSCG 42 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: comp(318..1655)

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.7
  • Coverage: 445.0
  • Bit_score: 783
  • Evalue 8.50e-224
23S rRNA methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003119740 similarity UNIREF
DB: UNIREF100
  • Identity: 87.2
  • Coverage: 445.0
  • Bit_score: 785
  • Evalue 1.60e-224
rumA; 23S rRNA 5-methyluridine methyltransferase similarity KEGG
DB: KEGG
  • Identity: 86.1
  • Coverage: 445.0
  • Bit_score: 774
  • Evalue 1.00e-221

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1338
GTGGCCCGATCCAGATCCCGCATAGACAAGACCCCGTTCCAGACCGACATCCTCGACCTCAGCCACGACGGCCGTGGCGTCGCCCGCCGCGAAGGCGAGGGAGGCAAGGTGACCTTCGTGGCCGGCGCGCTGCCCGGCGAGACGGTGATGGCCGAGCAGACCGGCAAAAGCCGCCACTTCGATGAAGCGCGGACCGTGGAAGTGCTCACCGCCTCGCCGCACCGCGTGCAGCCGCGCTGCCCGCATTTCGGCGTCTGCGCCGGCTGCGTGCTGCAGCACCTGGAGGAGGGCCAGCAGATCGTGGCCAAGCAGCAGGTGCTGATGGACAACCTGACCCGCATCGGCCATGTCAGCCCGGGCACGGTGCTGCCGCCGCTGGTGGGCGACAACTGGGGTTACCGGCGCAAGGGCCGGTTCTCGGTGCGCCGCGTCGAGAAGAAGGACAAGACCCTGGTGGGTTTCCGCGAGCAGGATCCACGCTTCGTCGCCGACCTGTCGCAGTGCCTGACCGTGATCCCCGAGATCGGCACCAGGGTGGCGGTGTTGTCGGCCTTCATCGAAGGACTGGACGGCAAGCGCGACATCCCGCAGATCGAGTTCATCGGCGGCGATGCGGCCATCGCGCTGACCGTGCGCCACCTGCAGCCGCTGTCCGATGCCGACCGGCAGGCATGGACGGCGTTCGGCCAGGAACACGGTTTCGCCATCTACCTGCAGCCCGGCGGGCTGGAGTCGGTGCATCCGCTGTGGCCGGCCGAAGGCGTGCCGCTGTCGTTCGCGCTGCCGCAGTGGGACGTTGAGCTGGCGTTCCGCCCGCTGGATTTCATCCAGGTCAACGCCAAGCTCAACCAGCAGATGATCGCCCACGCACTGGCCCTGCTGGACGCGCAGCCGGACGAGCGCGTGCTCGACCTGTTCTGCGGCCTGGGCAACTTCACCCTGCCGCTGGCGCGCACCGTGCGCGAAGTGGTGGGCGTGGAAGGCGAGGCCGGGCTGGTGGCGCGGGCGAAGGAGAACGCGCAGCGCAACGGCCTGGACAACGCGCAGTTCTTCGCCGCCGACCTCACCCAGGACCAGCGCAATGCGCCGTGGATGCGGCAGGGTTTCGACAAGCTGCTGCTCGACCCGCCGCGTTCGGGCGCCATCGACGTGCTGCAGCAGCTGCCGCTCAAGCAGTTCAAGCGCATCGTCTATGTCAGCTGCCATCCGGGCTCGCTGGCGCGCGATGCCGGCTACCTGGTCAACGAGCAGGGCTTCACCCTGGTGTCGGCCGGGGCGATGGACATGTTCCCGCATACCGCGCACGTGGAAAGCATCGCGGTGTTCGAAAAGAAATGA
PROTEIN sequence
Length: 446
VARSRSRIDKTPFQTDILDLSHDGRGVARREGEGGKVTFVAGALPGETVMAEQTGKSRHFDEARTVEVLTASPHRVQPRCPHFGVCAGCVLQHLEEGQQIVAKQQVLMDNLTRIGHVSPGTVLPPLVGDNWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSQCLTVIPEIGTRVAVLSAFIEGLDGKRDIPQIEFIGGDAAIALTVRHLQPLSDADRQAWTAFGQEHGFAIYLQPGGLESVHPLWPAEGVPLSFALPQWDVELAFRPLDFIQVNAKLNQQMIAHALALLDAQPDERVLDLFCGLGNFTLPLARTVREVVGVEGEAGLVARAKENAQRNGLDNAQFFAADLTQDQRNAPWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFEKK*