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SCN18_10_11_15_R1_P_scaffold_10398_2

Organism: SCN18_10_11_15_R1_P_Stenotrophomonas_69_7

near complete RP 45 / 55 MC: 3 BSCG 42 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: comp(347..904)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JWG2_STEMA similarity UNIREF
DB: UNIREF100
  • Identity: 72.8
  • Coverage: 184.0
  • Bit_score: 260
  • Evalue 7.40e-67
RNA polymerase sigma factor {ECO:0000313|EMBL:AHY59360.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 182.0
  • Bit_score: 263
  • Evalue 1.60e-67
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 72.8
  • Coverage: 184.0
  • Bit_score: 260
  • Evalue 2.10e-67

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
GTGGATACCGCCGTCCAAGCTCCGACCGACGAAGCGCTGATGCTGGCCTACGCCGAAGGCGATGGCGAAGCGTTCGCCGAGCTGTACGCGCGCCATCGCGCGCGGCTGTTCCACTACCTGCTGGGCCAGCTGCGCGACCGCTCGTTGGCCGAGGAGTTGTTCCAGGACGTGTGGCAGCGGCTGGTCCATGCCCGTTCGGGCTGGAAACCGGAAGCGGCCTTCGCTACCTGGCTGTTCCGCATCGCCCATAACCGCCTGAACGACCATTGGCGCGCCGCTCGGCACCGGCCCGCGGCGCCGGACGATGCCGAGCAGCGCACCGCGCGCCTGGCCGACACCTGCACCCCGGAACTGCTGGCCGACGAGCAGGCGCAACGGCTGCGGCTGCGCCAGGCGATGGCCGAACTGCCGCAGGAACAGCAGGAAGTCCTCATCCTGCGCCTGGAACAGGAACTGAGCCTGGAGGAGATCGGGCAGATCACCGGCGTGGGCCGGGAAACCGTCAAGTCGCGGCTGCGCTATGCGATGGACAAGCTGCGCGCGAGGTTGAGCGAATGA
PROTEIN sequence
Length: 186
VDTAVQAPTDEALMLAYAEGDGEAFAELYARHRARLFHYLLGQLRDRSLAEELFQDVWQRLVHARSGWKPEAAFATWLFRIAHNRLNDHWRAARHRPAAPDDAEQRTARLADTCTPELLADEQAQRLRLRQAMAELPQEQQEVLILRLEQELSLEEIGQITGVGRETVKSRLRYAMDKLRARLSE*