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SCN18_13_7_16_R2_B_scaffold_18159_2

Organism: SCN18_13_7_16_R2_B_Actinobacteria_71_7

partial RP 26 / 55 BSCG 28 / 51 ASCG 7 / 38
Location: 309..860

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RVD8_BLASD similarity UNIREF
DB: UNIREF100
  • Identity: 54.7
  • Coverage: 172.0
  • Bit_score: 165
  • Evalue 4.20e-38
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.1
  • Coverage: 176.0
  • Bit_score: 167
  • Evalue 9.00e-39
sigC2; RNA polymerase sigma-C factor similarity KEGG
DB: KEGG
  • Identity: 54.7
  • Coverage: 172.0
  • Bit_score: 165
  • Evalue 1.20e-38

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Taxonomy

Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 552
GTGACGGACGACCTGCGCCCGGTGGCTCTGCGAGCCGGGCGCGGCGATCCGGCCGCGCTCGCCGAGCTGGTACGAGCCACGAGCCGGCAGGTCTGGTGGACCTGCGCCAGCCTGGTCGACGCGGGCGCCGCCGACGACCTGACCCAGGACACCTATCTTCGTGCCGTGCGCTCGTTGCCGACCTATCGCGGAGATGCCGACCCGGCGCGTTGGCTGCTCACCATCGCCCGCCGGGTGTGCGCGGACGAGATCGCCCGTCGGCAGCGCAGCCGGCGCGCGGCGGCACAGGTGGGCGCCGAGCGACCGTCGACCGTGATCGAGCCCGCCCTCGGCGTCGAGGTGGCCGACGCCGTCAGCCGGTTGGCCCCCGAGCGGCGGGAGGCGTTCCTGCTGACCGCGGTGGCGGGCTTCTCCTACGCCGAGGCGGCCGCGGTGTGCGACTGCCCGATCGGGACGATCCGCAGCCGCGTCGCCCGCGCCCGCTCCGACCTCGTCGCCGCCCTGGGCCTCGCGGATGCGCCGGCGGCACTCGCGGTGGGGGCCGAGCGTTGA
PROTEIN sequence
Length: 184
VTDDLRPVALRAGRGDPAALAELVRATSRQVWWTCASLVDAGAADDLTQDTYLRAVRSLPTYRGDADPARWLLTIARRVCADEIARRQRSRRAAAQVGAERPSTVIEPALGVEVADAVSRLAPERREAFLLTAVAGFSYAEAAAVCDCPIGTIRSRVARARSDLVAALGLADAPAALAVGAER*