ggKbase home page

SCN18_13_7_16_R2_B_scaffold_26636_1

Organism: SCN18_13_7_16_R2_B_Actinobacteria_71_7

partial RP 26 / 55 BSCG 28 / 51 ASCG 7 / 38
Location: 3..1091

Top 3 Functional Annotations

Value Algorithm Source
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 87.4
  • Coverage: 365.0
  • Bit_score: 634
  • Evalue 1.80e-179
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CCG05130.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CCG05130.1};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.4
  • Coverage: 365.0
  • Bit_score: 634
  • Evalue 8.80e-179
DNA-directed RNA polymerase subunit beta n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B70F01 similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 367.0
  • Bit_score: 644
  • Evalue 3.60e-182

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 → SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1089
TGGCTGGTCGGCAACTCGGCCTGGCAGGCACGTAAAGACGCCCAGGCCGACGCCCGCTCCGGTCTCGAGGACATCCTGACCGAGCTCTCGCCCATCGAGGACTTCTCCGGCTCGATGAGTCTCTCCTTCTCCAACCCGCGCTTCGAGGACGTCAAGGCGTCCATCGAGGAGTGCAAGGACAAGGACATGACCTACGCGGCCCCGCTGTTCGTGACGGCCGAGTTCACCAACAACACCACCGGCGAGATCAAGTCGCAGACGGTGTTCATGGGCGACTTCCCGATGATGACCCGCAAGGGCACTTTCATCATCAACGGCACCGAGCGCGTCGTGGTCAGCCAGCTCGTCCGCTCGCCGGGCGTCTACTTCGACCGCACCCTCGACAAGACCTCCGACGTCGACGTCTACGGGGTCAAGGTCATCCCGAGCCGGGGCGCCTGGCTGGAGTTCGACGTCGACAAGCGCTCGACCGTCGGCGTGCGCATCGACCGCAAGCGCCGCCAGCCGGTCACCGTGCTGCTGAAGGCCTTGGGCTGGACCGAGGACCGCATCCGCGAGCACTTCTCCTGGTCCGAGACGCTGCTGGCCACCCTGGAGAAGGACCACATCGCGACTAGCGACGAGGCCCTGCTCGACATCTACCGCAAGCTGCGTCCGGGCGAGCCGCCGACGCGTGAGTCGGCCCAGGCACTCCTGGAGAACCTCTTCTTCAACCCGAAGCGCTACGACCTGGCCAAGGTCGGCCGCTACAAGGTCGACAAGAAGCTCGGCCTGGACGTGCCGATCGAGACCGGGACGCTCACCGAGGACGACGTCGTCCGCACCATCGAGTACCTCATCCGGCTGCACGCCGGCGAGGAGGGCTACGAGACCGACGACATCGACCACTTCGGCAACCGGCGGCTGCGCACGGTCGGCGAGCTGATCCAGAACCAGATCCGGGTCGGCCTGTCTCGCATGGAGCGCGTCGTCCGCGAGCGGATGACCACGCAGGACGTCGAGGCGATCACGCCGCAGACCCTGATCAACATCCGGCCGGTCGTCGCCTCCATCAAGGAGTTCTTCGGCACCAGCCAGTTGTCACAGTTC
PROTEIN sequence
Length: 363
WLVGNSAWQARKDAQADARSGLEDILTELSPIEDFSGSMSLSFSNPRFEDVKASIEECKDKDMTYAAPLFVTAEFTNNTTGEIKSQTVFMGDFPMMTRKGTFIINGTERVVVSQLVRSPGVYFDRTLDKTSDVDVYGVKVIPSRGAWLEFDVDKRSTVGVRIDRKRRQPVTVLLKALGWTEDRIREHFSWSETLLATLEKDHIATSDEALLDIYRKLRPGEPPTRESAQALLENLFFNPKRYDLAKVGRYKVDKKLGLDVPIETGTLTEDDVVRTIEYLIRLHAGEEGYETDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQF