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SCN18_14_9_16_R4_B_scaffold_4161_5

Organism: SCN18_14_9_16_R4_B_Actinobacteria_68_6

partial RP 33 / 55 MC: 3 BSCG 35 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: 3845..4213

Top 3 Functional Annotations

Value Algorithm Source
Collagen triple helix repeat n=1 Tax=Mycobacterium gilvum (strain PYR-GCK) RepID=A4T1Q3_MYCGI similarity UNIREF
DB: UNIREF100
  • Identity: 41.2
  • Coverage: 114.0
  • Bit_score: 73
  • Evalue 1.50e-10
triple helix repeat-containing collagen similarity KEGG
DB: KEGG
  • Identity: 43.7
  • Coverage: 103.0
  • Bit_score: 75
  • Evalue 8.30e-12
Collagen triple helix repeat {ECO:0000313|EMBL:ABM12098.1}; TaxID=350058 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.0
  • Coverage: 110.0
  • Bit_score: 67
  • Evalue 8.50e-09

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Taxonomy

SCNpilot_P_inoc_Xanthomonadales_63_13 → SCNpilot_P_inoc_Xanthomonadales_63_13 → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 369
GTGATCGGACCGGTCAAAACCATTGTCGCCTGCGCGATTGTCGCCCTGGTCGCCGGGGGCACCGGCGCCTTCGCCGCCGCCTCGCTCACGGGGGCCGGAAAGGTGTCTGCAGGCGTGCAGATGCAAGGTTGCCTCGACCCGGCGAAGGGCACGCTCGCGCTCTCGGACGCGCGATCGGATTGTGCCTCCGGCCTGGTGCCGGTGGCCTGGCAGGCTGCCGAGGCCGGAGCGGACGGGTCGCCGGGGCAGGTGGGCGCCGCGGGTCAGGATGGCGAGAACGGTGCCGCGGGCAAGGACGGCGCCGCGGGTGCCGCCGGCAAGAACGGTGCCGCGGGCAAGGACGGCGCCGCGGGTACCGCCGGCAAGAAT
PROTEIN sequence
Length: 123
VIGPVKTIVACAIVALVAGGTGAFAAASLTGAGKVSAGVQMQGCLDPAKGTLALSDARSDCASGLVPVAWQAAEAGADGSPGQVGAAGQDGENGAAGKDGAAGAAGKNGAAGKDGAAGTAGKN