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SCN18_14_9_16_R4_B_scaffold_5305_3

Organism: SCN18_14_9_16_R4_B_Actinobacteria_68_6

partial RP 33 / 55 MC: 3 BSCG 35 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: comp(912..2219)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI00037D7DAF similarity UNIREF
DB: UNIREF100
  • Identity: 83.3
  • Coverage: 443.0
  • Bit_score: 679
  • Evalue 1.60e-192
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=55969 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter komagatae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.0
  • Coverage: 467.0
  • Bit_score: 687
  • Evalue 1.10e-194
sigA; RNA polymerase principal sigma factor similarity KEGG
DB: KEGG
  • Identity: 74.7
  • Coverage: 482.0
  • Bit_score: 644
  • Evalue 2.10e-182

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Taxonomy

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 → Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1308
GTGGCGACTGCAACGAAGTCAAAAGCTGCTGCGAGCAAGACGGCTGAAGAAGCCGAAACGACGACAGGGGAGAGCGCCGCCAAGGCGCCGGCCAAGAAGGCACCCGCGAAGAAGGCGGCATCGGCGAGCGGCGAGAAGGCCGCTGTCGCCAAGGCCCCGGCCAAGGCCGCTGCGAAGAAGCCGGCCGTGAAGAAGGCTGCTGCGAAGAAGGCTGCTGCGAAGAAGGCCGTCGAGGAGGAGACTCCGGCCGACGAGTCGGTCGAGGTCGAGGAGACCGAAGAAGACACCGACGGCACTTCCACTCCCACGGCCAACAACGAGCCGCTGCCCACCGGCGCGATCGTGCTCAAGGCCGGCGACGAGGAGGACGTGCCCACGGTCACGACCGCCATTCCCGGCGCCACGGCCGACCCGGTCAAGGACTACCTCAAGCAGATCGGCAAGGTCGCGCTGCTGAACGCGGCCGAAGAGGTCGAACTCGCCATGCGGATCGAGGCGGGTCTCTTCGCCGAAGAGAAGCTCGCCACCGAGAAGAACCTGCCCAAGAAGCTGCAGCGCGAGCTGAAGTGGGTGGCCCGCGACGGCCAGCGCGCCAAGAGCCACCTGCTCGGCGCCAACCTGCGCCTCGTGGTGTCGCTCGCGAAGCGCTACACCGGTCGCGGCATGCAGTTCCTCGATCTGATCCAGGAGGGCAACCTCGGCCTCATCCGTGCGGTCGAGAAGTTCGACTACACCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGTCAGGCGATCACCCGTGCCATGGCCGATCAGGCGCGTACCATCCGCATCCCCGTGCACATGGTCGAAGTCATCAACAAGCTCGCCCGTGTGCAGCGTCAGATGCTGCAGGATCTGGGTCGCGAGCCCACCCCCGAAGAGCTCAGCCACGAGCTCGACATGACGCCCGAGAAGGTCGTCGAGGTGCAGAAGTACGGCCGCGAGCCGATCTCGCTGCACACCCCCCTCGGCGAGGACGGCGACAGCGAGTTCGGCGACCTGATCGAAGACACCGAGGCGGTCGTGCCGGCCGACGCGGTGGGCTTCACCATGCTGCAGCAGCAGCTGGAGCAGCTGCTCGACTCACTCAGCGAGCGCGAGGCGGGCGTGATCCGCATGCGCTTCGGCCTGGGCGACGGCATGCCCAAGACGCTCGATCAGATCGGCGACACTTTCGGGGTGACGCGCGAGCGCATCCGCCAGATCGAGTCGAAGACCATGGCGAAGCTGCGCCATCCCTCGCGGTCGCAGCAGCTGCGCGACTACCTCGAGTAG
PROTEIN sequence
Length: 436
VATATKSKAAASKTAEEAETTTGESAAKAPAKKAPAKKAASASGEKAAVAKAPAKAAAKKPAVKKAAAKKAAAKKAVEEETPADESVEVEETEEDTDGTSTPTANNEPLPTGAIVLKAGDEEDVPTVTTAIPGATADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAEEKLATEKNLPKKLQRELKWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELSHELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDTEAVVPADAVGFTMLQQQLEQLLDSLSEREAGVIRMRFGLGDGMPKTLDQIGDTFGVTRERIRQIESKTMAKLRHPSRSQQLRDYLE*