ggKbase home page

SCN18_14_9_16_R1_B_scaffold_5057_6

Organism: SCN18_14_9_16_R1_B_Rhizobiales_65_9

near complete RP 48 / 55 MC: 1 BSCG 51 / 51 MC: 5 ASCG 13 / 38 MC: 1
Location: comp(4024..4767)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.5
  • Coverage: 247.0
  • Bit_score: 458
  • Evalue 4.50e-126
tRNA pseudouridine synthase A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX83_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.5
  • Coverage: 247.0
  • Bit_score: 458
  • Evalue 3.20e-126
truA; tRNA pseudouridine synthase A similarity KEGG
DB: KEGG
  • Identity: 83.0
  • Coverage: 247.0
  • Bit_score: 424
  • Evalue 1.90e-116

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 744
ATGCCGCGCTACCGGCTTCGCATCGAATATGACGGCACGCCTTATGTCGGCTGGCAGCGGCAGGAGAACGGTCCTTCCGTACAGGGCGCCATCGAGGCGGCGATCCTGTCGCTGACAGGCGAGACGGTCTCGATCCGCGGCGCGGGCCGCACGGATTCCGGCGTCCATGCCATGGGGCAGGTCGCCCATGCCGATCTTTCGCGGCACTGGAAGGAGCACACGCTGAGGAACGCCCTCAACGCGCATCTCGGCATGGCCGGCGAGCGCGTCGCGATCCTCGATGCGGCCGAAGTGCCCGGCGATTTCGACGCCCGCTTCTCCGCGAAGAAGCGGCACTATCTCTACCGCATCATCTCGCGCCGCGCGCCGCTGGCGCTGGAGGCGAACCGGGCTTGGTTCGTCGCCAGGGAGCTGGATCACGAGGTGATGCATGCCGCAGGGCAGGTGCTGGTCGGCAGGCACGACTTCACCACCTTCCGCGCCGCCCAGTGCCAGGCGAACAGCCCCGTGCGCACCATCGACAGGCTGGAGGTGACGCGCAGCGGCGAGCTGATCGAGATCCGCGTCTCGGCGCAGAGCTTCCTGCACAACCAGATCCGCTCCTTCGCCGGCACGCTGAAGCTGGCGGGCGAGGGCAAGTGGACGGTGGACGACGTGCGCGCCGCGCTGGAAACGCGCGACCGCAAGGCCTGCGGCCCGGTGGCGCCGCCGGACGGGCTTTACTTCATGGCGGTGGACTACTGA
PROTEIN sequence
Length: 248
MPRYRLRIEYDGTPYVGWQRQENGPSVQGAIEAAILSLTGETVSIRGAGRTDSGVHAMGQVAHADLSRHWKEHTLRNALNAHLGMAGERVAILDAAEVPGDFDARFSAKKRHYLYRIISRRAPLALEANRAWFVARELDHEVMHAAGQVLVGRHDFTTFRAAQCQANSPVRTIDRLEVTRSGELIEIRVSAQSFLHNQIRSFAGTLKLAGEGKWTVDDVRAALETRDRKACGPVAPPDGLYFMAVDY*