ggKbase home page

SCN18_14_9_16_R1_B_scaffold_12367_2

Organism: SCN18_14_9_16_R1_B_Rhizobiales_65_9

near complete RP 48 / 55 MC: 1 BSCG 51 / 51 MC: 5 ASCG 13 / 38 MC: 1
Location: comp(368..2275)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.1
  • Coverage: 635.0
  • Bit_score: 1242
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESJ3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.1
  • Coverage: 635.0
  • Bit_score: 1242
  • Evalue 0.0
DNA-directed RNA polymerase, beta subunit similarity KEGG
DB: KEGG
  • Identity: 93.2
  • Coverage: 635.0
  • Bit_score: 1182
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1908
CGCGCCACCGAAGACCTCGATCCGTCGAAGTCGGGCGTCGATATCTACCGTCTGCAGAAGTTCCAGCGTTCCAACCAGAACACCTGCGTCAACCAGCGCCCGCTGGTCACCGTCGGCGACGTTCTGAACAAGGGCGACATCATCGCGGACGGTCCGTCGACCGACCTCGGCGACCTCGCGCTCGGCCGCAACGCGCTCGTCGCGTTCATGCCGTGGAACGGCTACAATTACGAAGACTCGATCCTGATGTCCGAACGCATCGTCTCCGACGACGTGTTCACCTCGATCCACATCGAGGAATTCGAAGTCATGGCCCGCGACACCAAGCTGGGCCCGGAAGAAATCACGCGCGACATTCCGAACGTCTCGGAAGAAGCGCTGAAGAACCTCGACGAAGCCGGTATCGTCTATATCGGCGCAGAGGTTCAGCCGGGCGACATCCTGGTCGGCAAGATCACCCCGAAGGGCGAAAGCCCGATGACGCCGGAAGAAAAGCTCCTGCGCGCCATCTTCGGTGAAAAGGCCTCCGACGTTCGCGACACCTCCATGCGCATGCCGCCCGGCACCTTCGGCACGGTCGTCGAAGTTCGCGTCTTCAACCGCCACGGCGTGGAGAAGGACGAACGCGCGATGGCGATCGAGCGTGAAGAGATCGAGCGTCTCGCCAAGGACCGTGACGACGCCCAGGCCCTCCTCGACCGTAACGTCTACGGCCGCCTGATCGACATGCTGCGCGGTCACGTCGCCGTCGCCGGCCCGAAGTCCTTCAAGAAGGGCACCGAGCTTTCGAACGCCGTGATCTCCGAATATCCCCGCTCGCAGTGGTGGATGTTCGCCGTCGAGGACGAGAAGGTCCAGGGCGAGATCGAAGCCCTGCGTGGCCAGTACGACGAATCCAAGTCGCGCCTTGAACAGCGCTTCATGGACAAGGTCGAGAAGGTCCAGCGCGGCGACGAAATGCCCCCGGGCGTCATGAAGATGGTCAAGGTCTTCGTCGCCGTGAAGCGCAAGATCCAGCCGGGCGACAAGATGGCCGGCCGTCATGGCAACAAGGGCGTCGTCTCGCGCATCCTGCCGATCGAGGACATGCCGTTCCTCGAAGACGGCACGCATGTCGACATCTGCCTGAACCCGCTGGGCGTGCCTTCGCGCATGAACGTCGGCCAGATTCTCGAAACCCACCTTGCCTGGGCTTGCGCCGGCATGGGCAAGAAGATCGGCGACCTGCTCGACGAGTATCGCAAGACCATGGACATCGCGGACCTGAAGCGCGAGCTGACGGAAGTCTACGAAAGCGAAGCCAAGGACGAAGTCGCCCACTTCGACGACGACGCCCTGGTCAAGCTTGCCGAGCAGTCCCGCAGGGGCGTCTCCATCGCGACCCCGGTCTTCGACGGCGCGCATGAGCCCGACGTTGCCGCCATGCTGGAGCGCGCCGGTCTTGCCTCTTCCGGTCAGTCGGTTCTCTACGACGGCCGTACGGGTGAGGCTTTCGACCGCCAGGTCACCGTCGGCTACATGTACATGATCAAGCTGAACCACCTCGTGGACGACAAGATCCACGCCCGTTCGATCGGTCCTTACTCGCTCGTTACCCAGCAGCCGCTGGGTGGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGGGAAATGGAGGTCTGGGCTCTCGAAGCCTACGGCGCCGCCTACACGCTGCAGGAAATGCTGACCGTGAAGTCGGACGACGTCGCGGGCCGCACCAAGGTGTACGAGGCGATCGTGCGTGGCGACGATACGTTCGAGGCGGGCATTCCGGAGAGCTTCAACGTTCTCGTCAAGGAAATGCGCTCGCTCGGCCTGTCGGTCGAACTCGAGAACTCCAAGGTCGACCCGAACGCGGAAGCCGGCCAGCTTCCCGACGCGGCGGAATAA
PROTEIN sequence
Length: 636
RATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLVTVGDVLNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDAQALLDRNVYGRLIDMLRGHVAVAGPKSFKKGTELSNAVISEYPRSQWWMFAVEDEKVQGEIEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLAWACAGMGKKIGDLLDEYRKTMDIADLKRELTEVYESEAKDEVAHFDDDALVKLAEQSRRGVSIATPVFDGAHEPDVAAMLERAGLASSGQSVLYDGRTGEAFDRQVTVGYMYMIKLNHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDPNAEAGQLPDAAE*