ggKbase home page

SCN18_30_10_14_R2_B_scaffold_15627_1

Organism: SCN18_30_10_14_R2_B_Rhizobiales_63_8

near complete RP 44 / 55 MC: 5 BSCG 48 / 51 MC: 8 ASCG 11 / 38 MC: 3
Location: 63..2900

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.1
  • Coverage: 946.0
  • Bit_score: 1802
  • Evalue 0.0
UPI0003D01371 related cluster n=1 Tax=unknown RepID=UPI0003D01371 similarity UNIREF
DB: UNIREF100
  • Identity: 95.1
  • Coverage: 946.0
  • Bit_score: 1802
  • Evalue 0.0
DNA-directed RNA polymerase, beta'' subunit, predominant form similarity KEGG
DB: KEGG
  • Identity: 94.8
  • Coverage: 946.0
  • Bit_score: 1798
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 → SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2838
ATGAACCAAGAGGTCATGAATCTCTTCAATCCGCAGACACCTGCGCAGACCTTCGATTCCATCCGGATATCGCTGGCCAGCCCCGAGAAGATCCAGTCCTGGTCGTTCGGCGAGATCAAGAAGCCGGAGACGATCAACTACCGCACGTTCAAGCCCGAGCGTGACGGGCTCTTCTGCGCGCGCATCTTCGGCCCGATCAAGGACTACGAGTGCCTGTGCGGCAAGTACAAGCGCATGAAGTACAAGGGCGTCATCTGCGAGAAGTGCGGCGTCGAGGTTACGCTGTCCCGCGTTCGCCGCGAGCGCATGGGCCACATCGAACTCGCCGCCCCGGTCGCCCATATCTGGTTCTTGAAGTCGCTGCCGAGCCGCATCGGCACGCTGCTCGACATGACGCTGAAGGATATCGAGCGCGTCCTTTATTTCGAGAACTACATCGTCACCGAACCCGGCCTGACCGCCCTGAAGGAGCACCAGCTCCTTTCAGAGGAGGAATATATGCTGGCCGTTGACGAGTATGGCGAGGACAGCTTCACCGCCATGATTGGCGCGGAGGCCATCCATGACCTGCTCGCCGCGATGGATCTCGACAAGATCGCGGGCGAACTCAGGACCGAGCTTGCCTCGACGACTTCGGAGCTGAAGCAGAAGAAGCTCTTGAAGCGCCTCAAGGTCGTCGAGCACTTCATGGAATCCGGCAATCGCCCGGAATGGATGATCCTCAACGTCGTCCCGGTCATCCCGCCGGATCTGCGTCCGCTGGTGCCGCTCGATGGCGGCCGCTTCGCGACTTCGGACCTGAACGATCTCTACCGTCGCGTCATCAACCGCAATAATCGTCTGAAGCGGCTGATCGAGCTGCGCGCACCGGGGATCATCATCCGCAACGAGAAGCGCATGCTGCAGGAGGCGGTCGACGCGCTGTTCGACAATGGCCGCCGCGGCCGCGTCATCACCGGCGCCAACAAGCGCCCGCTGAAGTCGCTGTCCGACATGCTGAAGGGCAAGCAGGGCCGTTTCCGGCAGAACCTGCTCGGCAAGCGCGTCGATTATTCCGGCCGCTCGGTCATCGTGACCGGCCCGGAACTGAAGTTGCATCAGTGCGGCCTGCCGAAGAAGATGGCGCTCGAGCTGTTCAAGCCGTTCATCTACGCGCGGCTCGACGCCAAGGGCTATTCGTCCACCGTCAAGCAGGCGAAGAAGCTGGTCGAGAAGGAAAAGCCGGAAGTCTGGGACATCCTTGACGAGGTCATCCGCGAGCATCCGGTGCTGCTCAACCGCGCGCCGACGCTGCACCGCCTCGGCATCCAGGCGTTCGAACCCATCCTGATCGAAGGCAAGGCGATCCAGCTTCATCCGCTGGTCTGCACGGCCTTCAACGCGGACTTCGACGGCGACCAGATGGCGGTCCACGTGCCGCTGTCGCTGGAAGCGCAGCTCGAAGCGCGCGTCTTGATGATGTCGACCAACAACATCCTGCATCCCGCTTCCGGCGCGCCGATCATCGTGCCGTCGCAGGATATGGTGCTTGGTCTCTACTATCTCTCGATCGTCAATCAGAACGAGCCGGGAGAGGGCATGGTGTTCGCCGATATGGGCGAATTGCATCATGCGCTGGAGACCAAGGCGGTCACCCTGCACACCAAGATCAAGGGCCGCTACAAGGGCGTCGATGCGGACGGCAAGGAAGTGTCGAAGATCTACGACACCACGCCGGGCCGTATGATCATCGGCGAGCTTCTGCCGAAGAACGTGAACGTCCCCTTTGAGACAGCCAACCAGGAGATGACCAAGAAGAACATCTCCCGGATGATCGATACGGTCTATCGTCACTGCGGCCAGAAGGAGACGGTCATTTTCTGCGATCGCATCATGGCTCTTGGCTTCAGCCATGCCTGCAAGGCCGGCATCTCGTTCGGCAAGGACGACATGCTCATTCCCGACACAAAGGCCGATCTGGTCGCCAAGACCGAGGCGCTCGCGAAGGAATACGAGCAGCAGTACAATGACGGCCTGATCACCCAGGGCGAAAAGTACAACAAGGTGGTCGATGCCTGGGCCAAGTGCTCGGAGAAAGTCGCCGAGGAGATGATGGGCCGCATCAAGGCGGTCGAATTCGAAGAGAACGGCCGTCAGAAGCCGATGAATTCGATCTACATGATGTCGCATTCGGGTGCCCGTGGCTCGCCGACGCAGATGCGTCAGCTCGCCGGCATGCGCGGCCTGATGGCCAAGCCGTCGGGCGAGATCATCGAGACGCCGATCATCTCGAACTTCAAGGAAGGCCTGACCGTGCTGGAGTACTTCAACTCCACCCACGGCGCCCGCAAGGGGTTGGCCGACACCGCTTTGAAGACGGCGAACTCGGGCTACCTGACCCGCCGTCTGGTCGACGTGGCGCAGGACTGCATCGTGGTCGCCACGGATTGCGGCACGGATAAAGGTCTGACCATGCAGCCGATCGTGGACGCCGGTCAGGTCGTCGCTTCGCTCGGCCAGCGCGTTCTCGGACGCACGGCGCTCGACGATGTCACGCATCCGGTCTCCGGCGATGTGATCGTCAAGGCCGGCAAGCTGATCGACGAGCGCGATGTCGAGCAGATCGAGAAGGCCGGCATCCAGTCGATCCGCATCCGCTCTGCCCTGACCTGCGATGTCAGGGTCGGCGTCTGTGCGGTCTGCTACGGGCGCGATCTGGCACGCGGCACGCCGGTCAATATCGGCGAGGCAGTCGGCGTCATCGCCGCCCAGTCGATCGGCGAGCCGGGCACGCAGCTCACCATGCGTACCTTCCACATGGGCGGTACGGCGCAGGTTGTCGATCAGTCGTTCCTTGAA
PROTEIN sequence
Length: 946
MNQEVMNLFNPQTPAQTFDSIRISLASPEKIQSWSFGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDSFTAMIGAEAIHDLLAAMDLDKIAGELRTELASTTSELKQKKLLKRLKVVEHFMESGNRPEWMILNVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMVFADMGELHHALETKAVTLHTKIKGRYKGVDADGKEVSKIYDTTPGRMIIGELLPKNVNVPFETANQEMTKKNISRMIDTVYRHCGQKETVIFCDRIMALGFSHACKAGISFGKDDMLIPDTKADLVAKTEALAKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVAEEMMGRIKAVEFEENGRQKPMNSIYMMSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVATDCGTDKGLTMQPIVDAGQVVASLGQRVLGRTALDDVTHPVSGDVIVKAGKLIDERDVEQIEKAGIQSIRIRSALTCDVRVGVCAVCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDQSFLE