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SCN18_30_10_14_R5_P_scaffold_4481_9

Organism: SCN18_30_10_14_R5_P_SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14_61_9

near complete RP 38 / 55 MC: 3 BSCG 42 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: comp(4461..4778)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.8
  • Coverage: 105.0
  • Bit_score: 183
  • Evalue 9.10e-44
2''-5'' RNA ligase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHC1_MESAW similarity UNIREF
DB: UNIREF100
  • Identity: 83.8
  • Coverage: 105.0
  • Bit_score: 183
  • Evalue 6.50e-44
2''-5'' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 83.8
  • Coverage: 105.0
  • Bit_score: 183
  • Evalue 1.80e-44

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Taxonomy

SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 318
ATGACGGCCTTGCAGGCTGAAATCGACCGTATCTGCCACCGCATGGGCATACCGGCCGACCCGCGCAAATTCATGCCGCATGTCACGCTGGCACGGTTGCGCAATTCCAGCCCTCTCGATGTCGCAAGCTATCTTTCGGCGCGCGGCAACTTCGCCGCAACGCCCTTCCGCGTCGGCAGGTTCGTGCTGATGTCGTCGCGCGATTCAGTCGGCGGCGGCCCCTACATCGTCGAGGAAGCCTGGCCGCTGCTGGGCACCGACACGCGTTCGGCCAACCGGCTAGAAAGCACATCCGACGCTTCGCGGATCATGCGATAG
PROTEIN sequence
Length: 106
MTALQAEIDRICHRMGIPADPRKFMPHVTLARLRNSSPLDVASYLSARGNFAATPFRVGRFVLMSSRDSVGGGPYIVEEAWPLLGTDTRSANRLESTSDASRIMR*