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SCN18_30_10_14_R5_P_scaffold_6353_2

Organism: SCN18_30_10_14_R5_P_SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14_61_9

near complete RP 38 / 55 MC: 3 BSCG 42 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: 785..1303

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y7B2_MESOW similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 172.0
  • Bit_score: 296
  • Evalue 1.50e-77
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ETA72148.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.6
  • Coverage: 172.0
  • Bit_score: 297
  • Evalue 9.30e-78
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 86.0
  • Coverage: 172.0
  • Bit_score: 296
  • Evalue 4.20e-78

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Taxonomy

SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 519
ATGGATGGCAAGAAGGCAGCGATTCTTGGCGAAATCCCGCGTTTGCGTCGCTACGCGCGTGCCTTGCTGCGTGATCGCGATGCCGCCGAAGATCTGGTGCAGGACTGCCTGGAACGCGCGCTGACCCGTCTCGACAACTGGCAGACCGGAGAAAGCCCCCGGAGGTGGCTGTTTACGATCATGCATCATCTCTTCATCGACCAGATGCGCAAGGTTGATAGGCGCGGCGAGGCGGCAATGCTGTCGCTCGACACCGACGAGGCGCTGGCAGCGCCCGCCGAGCAACTGGAGACGGTTGCCTCGCGCGAGATCGTCAACGCGCTCCATGCCATCAGCCCGGAGCGGCGCGCGGCGCTGGTGATGGTGGCAATCGAGGGCTTTTCCTATGCCGAGGCCGCCAACATGCTGGGCGTTCCGGCCGGCACGCTGATGTCGCGCATTTCGCGCGGCCGCGAGGAACTGAGGGGCCTACTGGAAGACAGCGCGCGCCGCCGCACACTGAGGGTTGTCGAGAAATGA
PROTEIN sequence
Length: 173
MDGKKAAILGEIPRLRRYARALLRDRDAAEDLVQDCLERALTRLDNWQTGESPRRWLFTIMHHLFIDQMRKVDRRGEAAMLSLDTDEALAAPAEQLETVASREIVNALHAISPERRAALVMVAIEGFSYAEAANMLGVPAGTLMSRISRGREELRGLLEDSARRRTLRVVEK*