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2019_SCN_bioreactor_t2_biofilm_scaffold_239789_16

Organism: 2019_SCN_bioreactor_t2_biofilm_Alphaproteobacteria_70_37

near complete RP 51 / 55 BSCG 51 / 51 MC: 1 ASCG 11 / 38
Location: comp(14254..16212)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPS0_GRABC similarity UNIREF
DB: UNIREF100
  • Identity: 83.3
  • Coverage: 654.0
  • Bit_score: 1064
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.3
  • Coverage: 654.0
  • Bit_score: 1064
  • Evalue 0.0
RNA polymerase sigma factor rpoD similarity KEGG
DB: KEGG
  • Identity: 83.3
  • Coverage: 654.0
  • Bit_score: 1064
  • Evalue 0.0

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Taxonomy

Granulibacter bethesdensis → Granulibacter → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1959
ATGGCAACCAAGCCGGGCGTGACCACCGATGCCGCAACCACCGAGCAGGACGCCGACACCACCCTGCTCGACGTGCAGTCCGCTTCCGTCAAGCGGCTGATCGCGAAGGGCAAGGAGCGTGGCCACATCACCTTCGATGAGCTGAACGCGGTGCTGCCGCCCGACCAGAACTCGTCGGAGCAGATCGAGGACGTGATGGCCAACCTGTCCGAGATGGGCATCCAGGTCGTCGAGGGCGAGGAGAGCGAGGACGGCGAGGCCCCGGCCGCCAAGGCCGAGAAGGGCGAGGAGGAGGAGGAGGCCGAGGCCACCGGCAACGTCGACGCCGAGAGCCTGGGCCGCACCGACGACCCGGTGCGCATGTACCTGCGCGAGATGGGCAGCGTGGAGCTGCTCTCGCGCGAGGGCGAGATCGCCATCGCCAAGCGCATCGAAGCCGGCCGCGACATGATGATCGGCGGGCTGTGCGAAAGCCCGCTGACCTTCCGCGCCATCATCGCCTGGCACGAGGCGCTGAAGGCCGGCCGCATGCTGCTGCGCGACATCATCGACCTTGAGGCCACCCAGGGCGGCCCGCCGGCCCCGGCGGTCGAGGGCGAGGCGGAAGGCGAGCCCGCCGAGCCGGTCGCCTTCACCGCCGCCCCCCCGCCGCCGCCGGACGACGAGGACGCCGAGGAGGGCGAAGGCGCCGGCCTGTCGCTTTCTGCGCTGGAAGAGAAGTTGAAGCCCGAGGTGCTGGCCAACTTCGAGGCGATCGAGCTGCTCTACAAAAAGCTGCACAAGATGCAGTCCAAGCGCCTGGAGACCATGACCTCGGGCGAGGAGGTCAACGCCCGCAGCGAAAAAACCTACGAAAAGACCCGCGAGGAGCTGGTCGCCACGGTCGAGCAGGTGCGCCTGCACAACAACCGCATCGAGGAGCTGGTCACCCAGCTCAAGCAGCTCAACCAGCGCCTGACCGGCCTGGAAGGCCAGTTGCTGCGCATGGCCGAGAGCTGCAAGGTCGCCCGCGACGACTTCCTCAACCAGTATCGCGGCCATGAGCTGGACCCGAACTGGGTGGAGCGCATCGGCAAGCTGCCGGGCAAGGCGTGGAAGACCTTCGCTACCCGCCACCCCGGCGACATCGCCGCCGTGCGCGCCCAGATCGCCGCCGTCGCCACCGACGCCAGCCTGCCGATCGGCGAGTTCCGCCGCGTCTACATGACGGTCAGCCGCGGCGAGCGCGACAGCGCCCGCGCCAAGAAGGAGATGATCGAGGCCAATCTGCGCCTGGTGATCTCGATCGCCAAAAAATACACCAATCGCGGCCTGCAGTTCCTGGACCTGATCCAGGAGGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAGTACCGCCGCGGCTACAAGTTCAGCACCTATGCCACCTGGTGGATCCGCCAGGCGATCACCCGCTCCATCGCCGACCAGGCCCGCACCATCCGCATCCCGGTGCACATGATCGAGACGATCAACAAGCTGGTGCGCACCAGCCGTCAGATGCTGCACGAGATCGGCCGCGAGCCCGCGCCCGAGGAACTGGCCGAAAAACTCGGAATGCCGCTCGAAAAAGTGCGGAAAGTGCTGAAAATCGCCAAGGAACCGATCAGCCTGGAGACCCCGATCGGTGACGAGGAAGACAGCCACCTGGGCGACTTCATCGAGGACAAGGCCGCCGTCATCCCGCTGGACGCCGCCATCCAGGCCAACCTGCGCGAGGCCACCACCCGCGTGCTCTCCAGCCTCACGCCCCGCGAGGAGCGTGTGCTGCGCATGCGTTTCGGCATCGGCATGAACACCGACCATACGCTGGAGGAGGTCGGCCAGCAGTTCAACGTCACCCGCGAGCGCATCCGCCAGATCGAGGCCAAGGCCCTGCGCAAGCTGAAGCACCCCAGCCGCAGCCGCAAGCTGCGCAGCTTCCTGGACGATTGA
PROTEIN sequence
Length: 653
MATKPGVTTDAATTEQDADTTLLDVQSASVKRLIAKGKERGHITFDELNAVLPPDQNSSEQIEDVMANLSEMGIQVVEGEESEDGEAPAAKAEKGEEEEEAEATGNVDAESLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGLCESPLTFRAIIAWHEALKAGRMLLRDIIDLEATQGGPPAPAVEGEAEGEPAEPVAFTAAPPPPPDDEDAEEGEGAGLSLSALEEKLKPEVLANFEAIELLYKKLHKMQSKRLETMTSGEEVNARSEKTYEKTREELVATVEQVRLHNNRIEELVTQLKQLNQRLTGLEGQLLRMAESCKVARDDFLNQYRGHELDPNWVERIGKLPGKAWKTFATRHPGDIAAVRAQIAAVATDASLPIGEFRRVYMTVSRGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKAAVIPLDAAIQANLREATTRVLSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDD*