ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_5458_7

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(9796..10857)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00035C83BB similarity UNIREF
DB: UNIREF100
  • Identity: 73.5
  • Coverage: 343.0
  • Bit_score: 477
  • Evalue 9.60e-132
RND efflux membrane fusion protein {ECO:0000313|EMBL:GAO53634.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.0
  • Coverage: 343.0
  • Bit_score: 641
  • Evalue 5.40e-181
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 53.4
  • Coverage: 350.0
  • Bit_score: 341
  • Evalue 1.80e-91

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1062
ATGGTTTTCGGTTTCGGAACGAACAGGGACATGCGGGGACATCTGTTTGCTTTCGCCGCCATCGGCATGGCGACGGCGTTCGGGCTGCCTCTCGCCGGCTGCGCCGACAGCGGCGAAACCACGCAGACGGCGAAGGCCCCCGCCGGCCCTCGCCTCACGCTTGCCATGCAGGACACCACGGCATGGCAGGACGTCAGCGCCGAAATCGCCACGGTCGACCAGGCGCAGGTGATGGCGCGCATCCCCGGCATCCTGAGCACGCTGACGGTCAAGGCGGGGGACACGGTCGCGAAAGGGCAGGCGATCGGCCGGATCGTCGATAGCCAGCTAGGGTTCCAGGCCGGCGCCTATGGCGCGCAGGCAGCGGCCGCGCAGGCACAGGCGGCGCAGGCCGCGGCAGACCTCCAGCGCGTAAAGTTCCTTCACGACAACGGCGTCTATGCCAAGGCCCGGCTCGATCAGGCGCAAGCCGCAGCCAGCGCCGCGCAGGCGCAGGTCCGCGCCGCGCAAGCGCAGCAGGCCGCCGTGGGCGCGGTGGCGGGGCAAGGCACGGTCGTCGCGCCGACCGCTGGCCGGGTGCTGCGCGCCGACGTGCCCGCCGGCGCGCCGGTTGCCCCCGGCATGGTCATCGCGGTGATCACCGCCGGGCCGACGATCGTCCGGCTCGAAATGCCCGAATCGCTCGCCGGCAAGGCCCATGCCGGATCGCGGGTGTCCGCGGCGGGCATGGGCGAAGGCCGGGTGATCAAGGTCTATCCCTCGGTCAACGCCGGCAAGGTGATGGCCGACGTCGACATGCCGGGCATCGACAACAGCCTGATCGGGCGGCGCGTGGCGGCGCGCGTCGAGATCGGGACGCGCAAGGCGCTGGTCGTCCCGGCCCGTTTCGTCACCACACGCTATGGCATCGATTACCTGACCGTTCTGGCGAAGGACGGCAGCGCAACCCAGGTTCCCGTCCAGACCGCGCCCGTCGAACAGGCGGACAGGGTCGAAATCCTCTCTGGCGCCAATCCGGGCGACACCATCGTTGCGGACACGGGCAAGGGAGCCGACCGCTAA
PROTEIN sequence
Length: 354
MVFGFGTNRDMRGHLFAFAAIGMATAFGLPLAGCADSGETTQTAKAPAGPRLTLAMQDTTAWQDVSAEIATVDQAQVMARIPGILSTLTVKAGDTVAKGQAIGRIVDSQLGFQAGAYGAQAAAAQAQAAQAAADLQRVKFLHDNGVYAKARLDQAQAAASAAQAQVRAAQAQQAAVGAVAGQGTVVAPTAGRVLRADVPAGAPVAPGMVIAVITAGPTIVRLEMPESLAGKAHAGSRVSAAGMGEGRVIKVYPSVNAGKVMADVDMPGIDNSLIGRRVAARVEIGTRKALVVPARFVTTRYGIDYLTVLAKDGSATQVPVQTAPVEQADRVEILSGANPGDTIVADTGKGADR*