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2019_SCN_bioreactor_t3_biofilm_scaffold_29489_12

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(13139..14506)

Top 3 Functional Annotations

Value Algorithm Source
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6N7_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 88.9
  • Coverage: 450.0
  • Bit_score: 780
  • Evalue 6.80e-223
Response regulatory protein {ECO:0000313|EMBL:GAO55945.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.7
  • Coverage: 455.0
  • Bit_score: 879
  • Evalue 1.50e-252
two component sigma-54 specific Fis family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 88.9
  • Coverage: 450.0
  • Bit_score: 780
  • Evalue 1.90e-223

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1368
ATGATGACCGAGGTGCGCCCCAAGCTGCTGATCGTCGAGGACGATCCCGGCCTTCAGGCCCAGCTCAAATGGGCCTACGAGGATTTCGACGTGTTTATCGCCGGAGATCGCGCCAGCGCGCTGGCGCTGCTGCGGGCGGAGGAGCCGGCGGTGGTGACGCTCGATCTGGGGCTGCCGCCCGATCCTGACGGAACCAGCGAAGGCTTTGCCGTGCTGGACGAGATCATGGCGCTCAAGCCCGATACCAAGGTGATCGTCGCCAGTGGCCACGGTGCGCGCGAAAGCGCGCTCACCGCGATCGCCAAGGGCGCCTATGATTTCTATCAGAAGCCGGTCGATATCGACGCGCTGGGCCTGATCGTGCGCCGCGCGCTGCACCTCCACCGGATCGAGGCCGAAAACCGTTCGCTGGCGGATCGCGCCGGGCCGGACAACAAGGTGCTGGGCCGGATGATCACGGCGGCGCCGGAAATGGTCAAGGTTGCCCGCACGATCGAACGGGTCGCCGGCACCAACGTCTCCGTCATGCTGCTGGGGGCGAGCGGCACCGGCAAGGAACTGCTGGCGCGGGGCCTGCACGACGCATCGAACCGGCGGCGTGGCGCGTTCGTCGCGATCAATTGTGCGGCAATCCCGGAAAACCTGCTCGAAAGCGAATTGTTCGGTTACGAGAAGGGGGCCTTTACCGGGGCTGTCAAGACCACCGAGGGCAAGATCGAGATGGCGAGCGGCGGCACGCTGTTTCTCGACGAAGTGGGCGACATCCCCTTTCCGCTGCAGGTAAAACTGCTGCGCTTTTTGCAGGAACGCACGATCGAGCGCATCGGTGGCCGTCGCTCCATCGAAGTCGATACGCGCATCGTGTGCGCCACGCACCAGAACCTGGAAGCGATGATCGCCGAAGGGCGGTTCCGCGAAGACCTGTACTATCGCCTGGCCGAAATCGTCGTGCGCATTCCGGGCCTTGCCGAAAGGCCGGGGGATGCCACACTGCTGGCCAATGCCTTCCTTGCACGCTTCGCCGCCGAGATGAATCCGGCGGTCAAGGGCTTCGCGGCCGACGCGCTGACCGCCATCGATTCGTGGAACTGGCCCGGCAACGTCCGTGAACTGGAAAACCGGATCAAGCGTGCGGTCATCATGGCCGATGGCAAGCTGGTGACGGCGCTGGACCTCGATCTGCCCGCACCCGACGAGAACACCGACAATCCTCTGAACCTCAAGACCGCGCGCGAGGCGACAGACCGGCGCGTGATCCGTCACGCGCTGGCGCGAAGCGAGGGCAACATATCCGGAACCGCACGCCTCCTCGGCATTAGCCGACCCACGCTTTATGATCTCCTCAAGCAATACGATCTCCAGCACTAG
PROTEIN sequence
Length: 456
MMTEVRPKLLIVEDDPGLQAQLKWAYEDFDVFIAGDRASALALLRAEEPAVVTLDLGLPPDPDGTSEGFAVLDEIMALKPDTKVIVASGHGARESALTAIAKGAYDFYQKPVDIDALGLIVRRALHLHRIEAENRSLADRAGPDNKVLGRMITAAPEMVKVARTIERVAGTNVSVMLLGASGTGKELLARGLHDASNRRRGAFVAINCAAIPENLLESELFGYEKGAFTGAVKTTEGKIEMASGGTLFLDEVGDIPFPLQVKLLRFLQERTIERIGGRRSIEVDTRIVCATHQNLEAMIAEGRFREDLYYRLAEIVVRIPGLAERPGDATLLANAFLARFAAEMNPAVKGFAADALTAIDSWNWPGNVRELENRIKRAVIMADGKLVTALDLDLPAPDENTDNPLNLKTAREATDRRVIRHALARSEGNISGTARLLGISRPTLYDLLKQYDLQH*