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2019_SCN_bioreactor_t3_biofilm_scaffold_132764_1

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 3..1073

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-54 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 86.6
  • Coverage: 357.0
  • Bit_score: 605
  • Evalue 8.70e-171
RNA polymerase sigma-54 factor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBM8_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 86.6
  • Coverage: 357.0
  • Bit_score: 605
  • Evalue 3.10e-170
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.7
  • Coverage: 357.0
  • Bit_score: 697
  • Evalue 6.40e-198

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1071
ACGCTGGCGCAGCACCTCCATGCCCAGATCGGCGCGGCGACGTCCGACGCGCAGCTCCTGTTCGTGGCGCGCTGGCTGATCGACCAGATCGACGAGGCCGGCTACCTCACCATCACCCTGGCCGAAGCGGCCGCCGACCTCGGCGTTCCCCCCGCCACGGCGGAAGCGGCGCTGGCGCTGGTGCAATCGCTCGATCCCACGGGCGTCGGCGCGCGATCGCTGGCCGAATGCCTGGCACTGCAGGCGCGCGAGGCCGATCGCTACGATCCCTGCATGGCGCGGCTGATCGACAACCTCGACCTTGTCGCGCGCGGGGAGTTTTCCCGGATCAAGCGCATGTGCGGCGTCGATGACGAGGATTTCGCCGACATGCTGGCCGAACTGCGCGGCTACGACCCCAAGCCCGGCCTGCGCTTCGGCGGCGGCGGCGCGGAAGCCGTGGTGCCGGACATCCTGATCCGCGCGGTGCCACGCAAGGACGGCTCGGTCGATTGGGATATCGCGCTCAACCAGGCTACGCTGCCGCGCCTGGTGGTCAATCGCAGCTACTACGTGGAAATGCGCGGCGCCTGCGTCAGCAAGGAAGCGCGCGGCTGGCTGGGGGAAAAGCTGGCCGACGCCAACTGGCTGCTGAAAGCGCTGGACCAGCGGCAGAAGACGATCCTGAAAGTAGCGGCCGAGATCGTGAAGCAGCAGGACGGGTTCTTCCGCCACGGCGTCTCGCACCTCCGCCCGCTGACGCTGCGGGCGGTGGCGGAAGCCATCGCGATGCACGAATCGACCGTCAGCCGCGTGACCTCGAACAAGTATCTCCACTGCGATCGCGGCACATTCGAGCTGAAGTACTTCTTCACCTCTGGCGTCGCTTCGGCCGATGGCGAAGGCGCGGTATCGGCCGAAGCGGTAAAGGCCGCGATCCGGCAACTGATCGACGCCGAGGATCCCAAGGCGATCCTGTCCGACGATGCGCTGGTCGATCTGCTGAAGCAACGCGGCTTCGATCTCGCCCGCCGCACGGTCGCCAAGTATCGCGAGGCGATCGGGCTGGGCAGCTCGGTGCAGCGGCGGCGC
PROTEIN sequence
Length: 357
TLAQHLHAQIGAATSDAQLLFVARWLIDQIDEAGYLTITLAEAAADLGVPPATAEAALALVQSLDPTGVGARSLAECLALQAREADRYDPCMARLIDNLDLVARGEFSRIKRMCGVDDEDFADMLAELRGYDPKPGLRFGGGGAEAVVPDILIRAVPRKDGSVDWDIALNQATLPRLVVNRSYYVEMRGACVSKEARGWLGEKLADANWLLKALDQRQKTILKVAAEIVKQQDGFFRHGVSHLRPLTLRAVAEAIAMHESTVSRVTSNKYLHCDRGTFELKYFFTSGVASADGEGAVSAEAVKAAIRQLIDAEDPKAILSDDALVDLLKQRGFDLARRTVAKYREAIGLGSSVQRRR