ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_133956_1

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(1..468)

Top 3 Functional Annotations

Value Algorithm Source
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 156.0
  • Bit_score: 301
  • Evalue 5.80e-79
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8) similarity KEGG
DB: KEGG
  • Identity: 90.4
  • Coverage: 156.0
  • Bit_score: 280
  • Evalue 2.80e-73
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD51_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 93.5
  • Coverage: 155.0
  • Bit_score: 284
  • Evalue 5.30e-74

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 468
ATGAAGGGCGTCGGCACAGACATCGGCACGATCCATTTCGTCGGCATCGGTGGCATCGGCATGTCCGGCATTGCCGAAGTCATGCACAACATGGGTTATTCGGTGCAGGGTTCGGACATCGCCGAAAGCTATGTCGTCGAAGGCCTGCGCAAGCGCGGCATTGCGGTGATGATCGGCCACAAGGCGGAGAACGTCGAAGGCGCGGCGGTGGTCGTCACCTCCACCGCCGTCCGGCGCGAAAATCCCGAAGTCGTCGCCGCCCTCGAAGCGCGCGTGCCGGTGGTGCGCCGTGCGGAAATGCTGGCGGAGCTGATGCGGCTCAAGAACACCGTGGCGGTGGCCGGCACCCACGGCAAGACCACCACTACCTCCATGGTCGCGGCGCTGCTCGATGCGGGCGGGGTCGATCCCACGGTCATCAACGGCGGCATCATCAATTCCTATGGCTCGAACGCCCGCCTTGGCGCG
PROTEIN sequence
Length: 156
MKGVGTDIGTIHFVGIGGIGMSGIAEVMHNMGYSVQGSDIAESYVVEGLRKRGIAVMIGHKAENVEGAAVVVTSTAVRRENPEVVAALEARVPVVRRAEMLAELMRLKNTVAVAGTHGKTTTTSMVAALLDAGGVDPTVINGGIINSYGSNARLGA