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2019_SCN_bioreactor_t3_biofilm_scaffold_133956_7

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(6667..8157)

Top 3 Functional Annotations

Value Algorithm Source
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.2
  • Coverage: 496.0
  • Bit_score: 937
  • Evalue 5.10e-270
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13) similarity KEGG
DB: KEGG
  • Identity: 82.2
  • Coverage: 490.0
  • Bit_score: 779
  • Evalue 4.70e-223
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9A0_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 82.2
  • Coverage: 490.0
  • Bit_score: 779
  • Evalue 1.70e-222

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1491
ATGAAGCTGGGGATCATCGCGCGCGAAGCGGGCTTCGCCCTGCCGGACGGCGTTGACGGCGCGCAAGGCGACGTGACCGGCTTCGCCATCGATCACCGCAAGGTCGCGCCGGGCACCGTGTTCGGCGCCTTCGCGGGCGCGCGCTTCAATGGCGAGGATTTCATCGCCGATGCCGTGGCGGCGGGCGCCGTCGCCGTGGTCGCCCGGCCCGAAGTGACCGTGGTGGGCGCGGTCCATATCGCCGATGCGCAGCCGCGCCGCGCCTTCGCCCGGCTTGCCGCGCGCTTCTTCACGCCCGTTCCCGAAACCGTGGTCGCGGTCACCGGCACCAACGGCAAGACCTCCACGGTGGAGATGACGCGGCAGCTCTGGCGCATGGCCGGCTATTCCGCCGCCTCGATCGGCACGCTGGGCGTCACTACGGCGGACGAATCCGTTTCCACCGGCCTCACGACGCCCGATATCGTGACGTTCCTTTCGAACATGACCGGTCTGGCGCGCGAAGGGGTCACGCACGTCGCCTACGAAGCGTCGAGCCACGGCCTGTCGCAGTACCGCAACGAGGGCCTGCGCGTCGTCGCCGGGGCTTTCACCAACCTCAGTCGCGACCATCTCGATTACCACGCGACGATGGACGATTACTTCGCCGCCAAGATGCGCCTGTTCGATGATGTCGTGGCCGATGACGGCACGGCGGTGATCTGGGCGGACGATGAGGCCTGGTCCGGCAAGGCCGTGGCCCACGCGGCGGCACGCGGGCTCAATCTGCTGACGGTCGGTGCGAAAGGCGAAGGCATCCGCCTGCTGTCGCGCACGCCCACCCAGCTCGGGCAGACGCTGGAGATCGAACACGGCGCCGAAGGCCAGCGCCGGGCGCGCAAGGTCAACCTGCCGCTGATCGGCGCCTACCAGGCCGCCAACGCGCTGGTCGCGGCCGGGCTGGTGCTGGCCACCGGCGGCGATGCGGACCGCACGTTCGAGGCGCTCGGCCGGCTCCAGCCGGTGCGCGGGCGGCTGGAGCGCGCCGCGATCAGCCGCGCCGGCGCGCCGGTCTACGTCGATTACGCGCACACCCCCGATGCGATCGAGGCGGCCATCGCCGCGCTGCGCCCGCACGTGAAGGGCCGCCTCATCACCGTGTTCGGCGCGGGCGGGGACCGCGATGGCGGCAAGCGCCCGGAAATGGGCCGCGCCGCCTGCGCCGGCTCCGATCTCGTCATCGTCACCGACGACAATCCGCGCGGCGAAGACCCGGCGGACATCCGCAAAGCCGTGCTCGCCGGCTGCACCGCCGGTGCGCGCGAGATCGGTGATCGTCGTGCCGCCATCGCCGCCGCCATTGCCGAGGCGACGGGGGATGACATCGTGCTGGTCGCCGGCAAGGGGCACGAACAGGGGCAGATCGTGGGCCGGGGCGATGCCGCGCGCGTCCTGCCGTTCGACGATGTGCAGGTGGCGCGCGAATGCGCCGGACCGGCCGGAGGGACCTGA
PROTEIN sequence
Length: 497
MKLGIIAREAGFALPDGVDGAQGDVTGFAIDHRKVAPGTVFGAFAGARFNGEDFIADAVAAGAVAVVARPEVTVVGAVHIADAQPRRAFARLAARFFTPVPETVVAVTGTNGKTSTVEMTRQLWRMAGYSAASIGTLGVTTADESVSTGLTTPDIVTFLSNMTGLAREGVTHVAYEASSHGLSQYRNEGLRVVAGAFTNLSRDHLDYHATMDDYFAAKMRLFDDVVADDGTAVIWADDEAWSGKAVAHAAARGLNLLTVGAKGEGIRLLSRTPTQLGQTLEIEHGAEGQRRARKVNLPLIGAYQAANALVAAGLVLATGGDADRTFEALGRLQPVRGRLERAAISRAGAPVYVDYAHTPDAIEAAIAALRPHVKGRLITVFGAGGDRDGGKRPEMGRAACAGSDLVIVTDDNPRGEDPADIRKAVLAGCTAGAREIGDRRAAIAAAIAEATGDDIVLVAGKGHEQGQIVGRGDAARVLPFDDVQVARECAGPAGGT*