ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_133956_10

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(10570..11568)

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.9
  • Coverage: 331.0
  • Bit_score: 632
  • Evalue 3.10e-178
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RSMH_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 82.1
  • Coverage: 330.0
  • Bit_score: 517
  • Evalue 6.00e-144
mraW; S-adenosyl-methyltransferase MraW similarity KEGG
DB: KEGG
  • Identity: 82.1
  • Coverage: 330.0
  • Bit_score: 517
  • Evalue 1.70e-144

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 999
GTGACCGCGCCCCTGCCTTCGCCCGAAGCCGGTCCCGCAACCGGATTCGGCCCGCACGTTCCCGTCCTGCTCGATGAAGTGGTGGAAGCGCTCGCGCCGTCGCCGGGCGACGTGATCGTGGATGCCACGTTCGGCGCGGGTGGCTATACCCGCCGCCTGCTTGCCGCCGGCGCCACCGTCCATGCCTTCGATCGCGATCCCGACGCGATCGCCGCCGGGCGGCGCTGGCCCGAGGCGCAGGGCGATGCGCCGCGTCTGGTGCTGCATCCGCGCCGGTTCTCGGAACTGGCCGAAGGGCTGGCCGAAGCCGGCGTCGCCAGCGTGCAGGGCGTGGTCTTCGATATCGGTGTCAGCTCGATGCAGCTCGATCAGGCCGCGCGCGGTTTCGCGTTCTCGTCGGACGGCCCGCTTGACATGCGCATGTCGCAGGACGGGCCGAGCGCTGCCGATTTTCTCAACGAGGCGGACGAACAGGCCATCGCCGACGTGCTCTACCGCTATGGCGAGGAGCGCCAGTCGCGCCGCGTGGCGCGCGCGATCGTGGCGGCGCGTCCACTGGAAACCACCGGCCAGCTCGCCGCCGTGGTGCGCAAGGCGCTGGGCCATCGCCCGGGCGCGCCCAAGGACCCGGCCACGCGCAGCTTCCAGGCGATCCGCATCCACGTGAACGGCGAACTCGACGAACTCGTCGCCGGGCTTGCCGGGGCGGAGCGGATGCTGGTGCCCGGCGGGCGGCTCGCCGTGGTCAGCTTCCACAGCCTCGAGGACCGCATCGTCAAGCAGTTCCTGCGCGAAGCGGCTGGCGCCATGCCCGCCGGATCGCGCCATCTGCCGCAGCTTGCCAGCACCGTGAAGCCGGTTTTTGAAAAGCCTTCGTCCGCCATCCGCCCCACCTCCGCCGAAGAGGCGCGCAATCCGCGCGCCCGCTCCGCCACCTTGCGCTGGGCGGTTCGCACCGCCGCGCCCGCGCGCGCCACATCCGGGAGCCTCGCCGAATGA
PROTEIN sequence
Length: 333
VTAPLPSPEAGPATGFGPHVPVLLDEVVEALAPSPGDVIVDATFGAGGYTRRLLAAGATVHAFDRDPDAIAAGRRWPEAQGDAPRLVLHPRRFSELAEGLAEAGVASVQGVVFDIGVSSMQLDQAARGFAFSSDGPLDMRMSQDGPSAADFLNEADEQAIADVLYRYGEERQSRRVARAIVAARPLETTGQLAAVVRKALGHRPGAPKDPATRSFQAIRIHVNGELDELVAGLAGAERMLVPGGRLAVVSFHSLEDRIVKQFLREAAGAMPAGSRHLPQLASTVKPVFEKPSSAIRPTSAEEARNPRARSATLRWAVRTAAPARATSGSLAE*