ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_169217_3

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(906..1436)

Top 3 Functional Annotations

Value Algorithm Source
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.2
  • Coverage: 176.0
  • Bit_score: 358
  • Evalue 4.50e-96
urocanate hydratase (EC:4.2.1.49) similarity KEGG
DB: KEGG
  • Identity: 95.5
  • Coverage: 176.0
  • Bit_score: 353
  • Evalue 2.90e-95
urocanate hydratase, partial n=1 Tax=Sphingomonas wittichii RepID=UPI00037E0AC8 similarity UNIREF
DB: UNIREF100
  • Identity: 95.5
  • Coverage: 176.0
  • Bit_score: 353
  • Evalue 1.00e-94

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 531
GAACTGCTGCCCGACAACGCGCACCTGCACCGCTGGCTCGACATGGCGCGCGAACGCATCCACTTTCAGGGCTTGCCCGCGCGCATCTGCTGGGTCGGCCTTGGTGACCGGCACCGGCAGGGCCTGGCCTTCAACGAGATGGTCGCGCGGGGCGAACTCAAGGCACCGGTGGTGATCGGCCGCGATCATCTCGATTCCGGATCGGTCGCCAGCCCCAACCGCGAAACCGAAGCCATGCGCGATGGGTCGGACGCGGTATCGGACTGGCCGCTGCTCAACGCCCTGCTCAACACCGCCAGCGGCGCGACCTGGGTGTCGCTGCACCACGGCGGCGGCGTGGGCATGGGCTTTTCGCAGCATTCCGGCATGGTGATCGTGGCCGACGGCACCGAAGCGGCGGCCCGGCGCCTCGAACGCGTGCTGTGGAACGATCCGGCGACGGGCGTCATGCGCCATGCCGATGCCGGCTATGAAATCGCGCTGGATTGCGCGCGTGAGAAGGGGCTGGATCTGCCCGGCATCCTCGGCTGA
PROTEIN sequence
Length: 177
ELLPDNAHLHRWLDMARERIHFQGLPARICWVGLGDRHRQGLAFNEMVARGELKAPVVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVADGTEAAARRLERVLWNDPATGVMRHADAGYEIALDCAREKGLDLPGILG*