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2019_SCN_bioreactor_t3_biofilm_scaffold_163701_5

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(3057..4487)

Top 3 Functional Annotations

Value Algorithm Source
Outer membrane efflux protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IPI8_BORPD similarity UNIREF
DB: UNIREF100
  • Identity: 48.6
  • Coverage: 484.0
  • Bit_score: 407
  • Evalue 1.60e-110
Outer membrane protein {ECO:0000313|EMBL:GAO56485.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.3
  • Coverage: 476.0
  • Bit_score: 913
  • Evalue 9.90e-263
outer membrane efflux protein similarity KEGG
DB: KEGG
  • Identity: 48.6
  • Coverage: 484.0
  • Bit_score: 407
  • Evalue 4.60e-111

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1431
GTGAACAGGATCGGTCGCCTGACCCGGCTGGCGGCGCTGCTCGCCCCCACCTTGGTGCTGTCCGCCTGCGTCCATGTGCCGATGGAGCGCGACCGGACCCAGACCGCGCTTTCCGAAGCGCCGGCCGCCAATGCGCCATTCGTCAGCATGGACAAGGGACCATTCCGGGATGATCCCGTGCCGGGCCGCTGGTGGAAGCTCTACGACGACCCCCAGCTCGACGGTCTGATCGAGGAAGCGTTCAAGGCCAACACCGATCTGCGCGTGGCGGCGGCGAACATCGACCGCGCCAGTGCCATGATCCGGCAGGCCCATGCACAGGGAACGGTTCTGGCGAACCTCAACGCCGGGGCCACGGTCAATCGCGATCCGGTCGCTTTCGAGAGTTTTCAGGGTTATCCGCTGGTCAGCGGCGGGGCGTCGCTCACCTATGATTTCGACGTCGGCGGGCGCATCCGCAGCCTGACGGCGGCGGCCGGGCATGACCGTGACGCGGCGCAGGCCGCCTATGACCTGACGCGCGTCAACGTGGCGGCGGGTGTGGCCGGGGCCTATGCCGATGCCTGCGCGGCGGGAATGCTGCGCGCGCGGGCGCAGCACAGCCTTGGCCTGCTGCGCCGCAATCTGGAATTCACCAACCGGCTGATCGCGGCCGGACGCGGAACGCCGCTCGATCGCGACAACGCCGAAGTGCTGGTGGCGCAGCTCGAGGCGCAGATGCCGGGATTCGATACCGCGCAGGAAAACGCGCTGTTCCGACTGGCGACGCTGCTGGGGAGGCCGCCGGCCGAATTCCCGAAAGAGGTCCAGACCTGCGTGCAGCCGCCGCGCGTAACCAGCGTGCTGCCGGTGGGCGATGGTGCCGCCTTGCTGCGCCGCCGGCCCGATGTGCGCGCGGCCGAGCGCACGGTCGCGGGCTCGCTTGACCGGATCGGCGTGGCGCGGTCCGAGCTTTATCCCACCGTGCGCTTCGGCGCTTCCGTGGAGGACGTCAGCCCGTTCAAGTTTCCGGGAACACCACGCGGCTTGTCGTTCGGCCTGGGGCCGCTGCTGTCGTGGACTTTTCCCAACCGCAAGATTGCTCATGCCGAAATCGCGGCGGCCGAAGCCGAACGCGATGCGGCGCTGGCACGCTTCGACGGCGTGATGCTGGGCGCGCTGCGCGAGACGGAAAGCGCGCTGACGACCTATGCCCACGAACTCCAGCGCAATGCCTCGTTGCGCGAGGCGCGCGACAAGGCGGCTGCGGCGCTGTCCAAGGTCCAGCGGATGCGTGCGGCCGGGCGCGAGAACGCGCTGACCGGGCTGGACGCCGCACGCACGCTGTCGGCGGCGGAAATGACGCTGGCGACATCGGACGCCGCGCTCGCCAGCGATCAGGTGGCGGTGTTCCTGGCGCTGGGCGGCGGTTGGCAGGCCGACGGAGCCTGA
PROTEIN sequence
Length: 477
VNRIGRLTRLAALLAPTLVLSACVHVPMERDRTQTALSEAPAANAPFVSMDKGPFRDDPVPGRWWKLYDDPQLDGLIEEAFKANTDLRVAAANIDRASAMIRQAHAQGTVLANLNAGATVNRDPVAFESFQGYPLVSGGASLTYDFDVGGRIRSLTAAAGHDRDAAQAAYDLTRVNVAAGVAGAYADACAAGMLRARAQHSLGLLRRNLEFTNRLIAAGRGTPLDRDNAEVLVAQLEAQMPGFDTAQENALFRLATLLGRPPAEFPKEVQTCVQPPRVTSVLPVGDGAALLRRRPDVRAAERTVAGSLDRIGVARSELYPTVRFGASVEDVSPFKFPGTPRGLSFGLGPLLSWTFPNRKIAHAEIAAAEAERDAALARFDGVMLGALRETESALTTYAHELQRNASLREARDKAAAALSKVQRMRAAGRENALTGLDAARTLSAAEMTLATSDAALASDQVAVFLALGGGWQADGA*