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2019_SCN_bioreactor_t3_biofilm_scaffold_163879_3

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 1915..2424

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 170.0
  • Bit_score: 342
  • Evalue 3.20e-91
transcription termination factor Rho n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B56883 similarity UNIREF
DB: UNIREF100
  • Identity: 97.6
  • Coverage: 170.0
  • Bit_score: 337
  • Evalue 5.70e-90
rho; transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 98.2
  • Coverage: 170.0
  • Bit_score: 336
  • Evalue 2.80e-90

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 510
ATGCATCTCAAGGAACTCAAGAAGAAAACCCCCGCCGAGCTGGTCGAAATGGCCGAGGAGCTTGGCGTCGAAGGCGCATCGACCATGCGCCGCCAGGACCTGATGTTCGCCATCCTCAAGGAGATGGCGGAAGACGGCGAGGAAATCCTCGGCATCGGCACGATCGAGGTCCTGCCCGATGGCTTCGGCTTTCTGCGTTCGCCCGAAGCCAACTACCTGGCCGGCCCCGACGACATCTACGTTTCGCCCAACCAGGTCCGCAAATGGGGCCTGCGCACGGGCGACACCGTGGAAGGCGAAGTCCGCGCGCCCAAGGACGGCGAGCGCTATTTCGCGATCACCCGGCTGATCAAGGTCAATTTCGACGATCCCGAGGCGGTCCGCCACCGCGTCAACTTCGACAACCTGACGCCGCTCTATCCCAACGAGCGCCTGAAGCTCGATACGCTCGACCCCACGGTCAAGGACAAGTCGGCCCGCGTGATCGACCTCGTCAGCCCGCAGGGCAAG
PROTEIN sequence
Length: 170
MHLKELKKKTPAELVEMAEELGVEGASTMRRQDLMFAILKEMAEDGEEILGIGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEVRAPKDGERYFAITRLIKVNFDDPEAVRHRVNFDNLTPLYPNERLKLDTLDPTVKDKSARVIDLVSPQGK