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2019_SCN_bioreactor_t3_biofilm_scaffold_170080_5

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 4601..5569

Top 3 Functional Annotations

Value Algorithm Source
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.9
  • Coverage: 322.0
  • Bit_score: 595
  • Evalue 2.40e-167
hemC; porphobilinogen deaminase (EC:2.5.1.61) similarity KEGG
DB: KEGG
  • Identity: 78.2
  • Coverage: 308.0
  • Bit_score: 476
  • Evalue 3.20e-132
Porphobilinogen deaminase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4K1_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 78.2
  • Coverage: 308.0
  • Bit_score: 476
  • Evalue 1.10e-131

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 969
ATGACCCATACCTTCCTCCATGACGGCCCCGCACCGGCTCCGCAAACCCCGCTGCGGCTCGGCACGCGCCAGTCCCCGCTCGCGATGGCGCAGGCGCATGAGGCGCGCGACCGGCTGTGCGCGGCGCACGGCTGGCCCGCCGAAGCGGTGGAAATCGTGCCCGTCATCGCCAGCGGGGATCGCATCCAGGACCGCCCGCTCGCCGAGATCGGCGGCAAGGCGCTGTGGACCAAGGAACTCGATGGCTGGCTCGCTTCGGGCGAGATCGATTTCGCGGTCCATTCGATGAAGGACGTGGAAACGATCCGGCCGGAGGAACTGACGATCGCCGCCGTGCTGCCCCGCGCGGACGTGCGCGACGTGCTGGTGGGCGCGGAAAGCGTCGCGGCGATCCCTCCCGGCGCGCGGGTGGGCACCAGCGCGCCGCGCCGGGCGGCGCAGATGCTCCACGCGCGGCCCGACCTTTTGATCGTGCCGTTCCGCGGCAACGTCGCCACCCGGCTCGCCAAGCTGCAGGCCGGCGAAGCCGACGTCACGCTGCTGGCCGCCGCCGGCCTCGTCCGGCTGAACCAAGCCGGCGTGGGCCATCCGCTGCCGACCGATCGCTGGTTGCCCGCCCCGGCGCAAGGCGCGATCGGCATCGAATGCCTGACCGCGCGGCACGACGTGCGCGGCTGGCTGGCCGCGATCGATCACGCGCCGACCCACGCCGCCGTCCGCGCCGAACGCGCGCTGCTGCTGGCGCTGGGCGGCAACTGCCACAGCCCGATCGCGCTCCATACCCAGACCGATGGCGATGAGCTGACACTGCACGCGGCGCTGTTCAGCCCCGATGGCGCGCTGCGCGTGGAAGCCACGGAACGCTTTTCCGCCGGCGACGAAACCGCCCCCGCTCGCCTTGCCGACCGCCTGCTGGCGCAAGCGCCCGACGGCATCCGCGTCCACTTCCACGGCACGGCGCTGCACTGA
PROTEIN sequence
Length: 323
MTHTFLHDGPAPAPQTPLRLGTRQSPLAMAQAHEARDRLCAAHGWPAEAVEIVPVIASGDRIQDRPLAEIGGKALWTKELDGWLASGEIDFAVHSMKDVETIRPEELTIAAVLPRADVRDVLVGAESVAAIPPGARVGTSAPRRAAQMLHARPDLLIVPFRGNVATRLAKLQAGEADVTLLAAAGLVRLNQAGVGHPLPTDRWLPAPAQGAIGIECLTARHDVRGWLAAIDHAPTHAAVRAERALLLALGGNCHSPIALHTQTDGDELTLHAALFSPDGALRVEATERFSAGDETAPARLADRLLAQAPDGIRVHFHGTALH*