ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_170411_4

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 1184..1396

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, XRE family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCD3_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 69.0
  • Bit_score: 112
  • Evalue 9.40e-23
Transcriptional regulator of Cro/CI family {ECO:0000313|EMBL:GAO54144.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.1
  • Coverage: 70.0
  • Bit_score: 136
  • Evalue 1.50e-29
XRE family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 78.3
  • Coverage: 69.0
  • Bit_score: 112
  • Evalue 2.70e-23

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 213
ATGCCGGTCGTGGTCCGACTGGACGAGCTGCTCCAGGCCCGGGGCATGACGCTCACCGAACTGGCCGAGCGGGTCGACATGACGCTCGCCAACCTTTCCATCCTGAAAACCGGCAAGGCCAAGGCGATCCGCTTCTCCACGCTGGAAGCGATCTGCCAGGAGCTGGGATGCCAGCCGGGCGATCTGCTGGGCTACCGGGGCGAGGCGGAATGA
PROTEIN sequence
Length: 71
MPVVVRLDELLQARGMTLTELAERVDMTLANLSILKTGKAKAIRFSTLEAICQELGCQPGDLLGYRGEAE*