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2019_SCN_bioreactor_t3_biofilm_scaffold_299623_8

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(6582..8870)

Top 3 Functional Annotations

Value Algorithm Source
ligand-gated channel protein n=1 Tax=Sphingomonas wittichii RepID=UPI000306DAA7 similarity UNIREF
DB: UNIREF100
  • Identity: 68.4
  • Coverage: 750.0
  • Bit_score: 1020
  • Evalue 5.00e-295
Uncharacterized protein {ECO:0000313|EMBL:GAO53475.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.9
  • Coverage: 758.0
  • Bit_score: 1509
  • Evalue 0.0
TonB-dependent receptor similarity KEGG
DB: KEGG
  • Identity: 68.3
  • Coverage: 750.0
  • Bit_score: 1018
  • Evalue 7.00e-295

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2289
GTGACAAAGAACATGAACCGGGGTTGCACCTCAATCCGCCTCAAGGCCATGCTGCTGGCGGCGGGAAGCGCGACGCTGCTCGCCACACCGGCTCTGGCGCAGGAAACGCCCCAGGACCGCGGCGGCGATGAAATCGTGGTGACCGCGCTGAAGCGCGAAACCAACCTGCAGGACACGCCGATCGCGATTTCCGCCATCAGCGGCGCAGCGCTTGCCAATTCGGGCGTGCAGAGCATCGCCGATCTGGGCGCGACCACGCCGGGCCTCAACTTCGTCGATGGCGGGCCGTCGCAACGCCGCGTGGTCATCCGCGGCATCCAGGGTCCGGGCGAGCCGATGATCGGCACCTATTACGACGAAACGCCGGTGACCGGATCGATCGGCGCCAGCAACGACGCCGGCGGATCGACGCCCGAACTGCGCCTGTTCGACGTGCAGCGCGTGGAAGTGCTGCGCGGTCCGCAGGGCACGCTCTATGGCTCGGGTTCGATGGGCGGCACGCTGCGCGTGATCTACAACAAGCCGAACCTGGACGCGGTGCAGGCCGGCGTGGACATCAGCGGTTCCAACACGCACCACGGCGGCTGGAACATGGAAGGCAGCGCAATGATCAACGCGCCGATCGTGACCGACAAGGTCGGCCTGCGCGTCGTCGGCTTCTATCGCAACCAGGATGGTTTCATCGACAACACCACGCTGGGCATCAAGAACATCAACAAGCAGGAAAGCTTCGGCGGCCGCGCGCTGCTGCGCCTGAAGCCGACCGAGCGCTGGACGATCGATCTTGCGGCCTACATCAACCGCAGCCGGACCGACACGCCGAGCTGGACGCTGGGCGCCGGCAAGTACATCTCCGATGCCTATACCCGCCAGCCGGTGCGCGACAACGTGGAGCTGTACAGCATCACGTCGAACTATGACCTCGATTTCGCGACGCTGACCGCGACCGGATCGTACATGCACCGCAAGCTGTCGTCGGTCTCCGACGTTTCGCGCTACATCCGCGGGCAGCGCACGCCCGCCCGCTGTTCAGCGCTGGTTGCCGGCGGGGCGGCCTGTTCGCCGACCCAGCTCACGAACTTCTACGCGCTGGTCGATGGCCAGTCGACGTCGGCGCTGTTCCCGCAGCAGGACATGGACACCTGGACCGGCGAAATCCGCCTCAGCTCGAACGGCAAGGGACCGATCAACTGGACCCTGGGCGGCTTCTATTCGAACCGCCACACCAACGTGGCCAATCCGCAGGTCAATGCCGATCCGCTGAACGGCCAGGTGATCTATCCGCTCCAGATCGCCACGGTGCGCTTCATCGATGACAGGCTGGAACAGATCGCGGGCTTCGGCGAAGTGTCGTGGGATATCACCGATCGCCTCAACCTGACCGGTGGCGCGCGCTATTTCCACTACAACAAGAACATCGTGGGCCAGACGACCGTTCCCTCGATCCTGGTCGGCGCGCGCCTCACGCCGCCCACCGCCGTCACGTCGGGCGAAAGCGGCTGGGTGGTCAAGGCCAACGCATCGTACAAGATCACGCAGGACGTGATGCTCTATGCCGAAGCGGCGCAGGGCTTCCGCCCGGGCGGCGCCAACCAGGTGCTGGGCCTCGACGCCGCGCTGACCGCGTACAATTCGGACAGCCTGTGGAACTACGAAGTGGGCCTCAAGACGGCGTGGTTCGACCGCAAGGTGACGCTCAACGTCGATGCGTTCCAGATCGACTGGAGCGACATGCAGATCACGCTGCGCACGCCCAACGGCGCCTTCTCCTACATCGGCAACGCCGGCAAGGCGAAGGTCAAGGGGATCGAGGCGGAAACCGGCATCCACCCGCTGCCAGGCCTGTCGATTCTGGGCAACTTCTCCTACATCGACGCCAAGCTGACCGAGAACCAGAACACCGGCGTGACCGCCACGTCGGGCCTGAAGGGCGATCGCATACCCTACGTGCCCAAGATCATGGGTGGCGGTTCGGCGCAGTACAGCTGGCCGCTCACCGAGTCTCTCTCGGGCTTCCTGCGGGCGGACTTCAACTATGTCGGCAGCTCGTGGTCGGATTTCCGTCCGAACTACGTCTATGCCCGCAAGGTTGACGATTACGCGCTGGTCAACGCCCGCATCGGCATCGAGGAGCCCGACAACAAGTGGGGCGTGTACCTCTTCGTCACCAACCTGTTCGACGCGACCGCGATCACGCGTTCCACGTCGAGCGCCATCGCCGTCGGCCGCACGCTGGTAACCAGCGCCACGCCGCGCACGGTCGGCGTCAATTTCCGTACCAACTTCTGA
PROTEIN sequence
Length: 763
VTKNMNRGCTSIRLKAMLLAAGSATLLATPALAQETPQDRGGDEIVVTALKRETNLQDTPIAISAISGAALANSGVQSIADLGATTPGLNFVDGGPSQRRVVIRGIQGPGEPMIGTYYDETPVTGSIGASNDAGGSTPELRLFDVQRVEVLRGPQGTLYGSGSMGGTLRVIYNKPNLDAVQAGVDISGSNTHHGGWNMEGSAMINAPIVTDKVGLRVVGFYRNQDGFIDNTTLGIKNINKQESFGGRALLRLKPTERWTIDLAAYINRSRTDTPSWTLGAGKYISDAYTRQPVRDNVELYSITSNYDLDFATLTATGSYMHRKLSSVSDVSRYIRGQRTPARCSALVAGGAACSPTQLTNFYALVDGQSTSALFPQQDMDTWTGEIRLSSNGKGPINWTLGGFYSNRHTNVANPQVNADPLNGQVIYPLQIATVRFIDDRLEQIAGFGEVSWDITDRLNLTGGARYFHYNKNIVGQTTVPSILVGARLTPPTAVTSGESGWVVKANASYKITQDVMLYAEAAQGFRPGGANQVLGLDAALTAYNSDSLWNYEVGLKTAWFDRKVTLNVDAFQIDWSDMQITLRTPNGAFSYIGNAGKAKVKGIEAETGIHPLPGLSILGNFSYIDAKLTENQNTGVTATSGLKGDRIPYVPKIMGGGSAQYSWPLTESLSGFLRADFNYVGSSWSDFRPNYVYARKVDDYALVNARIGIEEPDNKWGVYLFVTNLFDATAITRSTSSAIAVGRTLVTSATPRTVGVNFRTNF*