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2019_SCN_bioreactor_t3_planktonic_scaffold_458_6

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: comp(5532..6065)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SI91_PLABD similarity UNIREF
DB: UNIREF100
  • Identity: 64.5
  • Coverage: 172.0
  • Bit_score: 233
  • Evalue 9.20e-59
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 64.5
  • Coverage: 172.0
  • Bit_score: 233
  • Evalue 2.60e-59
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADY61793.1}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.5
  • Coverage: 172.0
  • Bit_score: 233
  • Evalue 1.30e-58

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Taxonomy

Rubinisphaera brasiliensis → Rubinisphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 534
ATGAATACGTATTCGGAAACGCGTCATCAAAAGTTCTTGCGTGTGTTCACGTTACACGAGCCGGCAATCCGAGCATTTGTTCGTCGGCTCGTACCGTCGCGCACTGACGCGGATGACATTCTGCAAGAAGTCGCGATCGTCTTGTGGGAGAAGTTTGATGAATTTCGCGAGGACGGTGATTTTCGAGCGTGGGCATACGGGATCACTCGTTTCAAGGTCCTGTCTTGTTTACGCGATCGCGGACGGGATCGAATCGTCCTGTCGAGTGACGTGATTGAATTGATCGCGACGAGTTCTCTCGAGATCGATCTTCAGCTCGAGCAAGAACGAAACATGTTGGAGTCCTGCTTCAAGAAGATTTCTCCCAAAGAGAAAGAGCTTTTGGCGCGAGCCTATGACAGTGATTCAAAAATCCAAGACGTTGCCGCGATGAGTGGACGATCGATCCGCGGCTTTTATCAATGGTTGTACCGCATGCGGCAAACGTTGCTCGACTGCATCCGCCGCGAAATGGCCAAGGAGGCTTTTTCGTGA
PROTEIN sequence
Length: 178
MNTYSETRHQKFLRVFTLHEPAIRAFVRRLVPSRTDADDILQEVAIVLWEKFDEFREDGDFRAWAYGITRFKVLSCLRDRGRDRIVLSSDVIELIATSSLEIDLQLEQERNMLESCFKKISPKEKELLARAYDSDSKIQDVAAMSGRSIRGFYQWLYRMRQTLLDCIRREMAKEAFS*