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2019_SCN_bioreactor_t3_planktonic_scaffold_6898_16

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: 17254..17814

Top 3 Functional Annotations

Value Algorithm Source
Probable RNA polymerase sigma factor rfaY n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CBQ5_9PLAN similarity UNIREF
DB: UNIREF100
  • Identity: 64.0
  • Coverage: 164.0
  • Bit_score: 216
  • Evalue 1.60e-53
Probable RNA polymerase sigma factor rfaY {ECO:0000313|EMBL:EDL57822.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.0
  • Coverage: 164.0
  • Bit_score: 216
  • Evalue 2.30e-53
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 43.2
  • Coverage: 169.0
  • Bit_score: 144
  • Evalue 1.70e-32

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Taxonomy

Gimesia maris → Gimesia → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 561
GTGTCGTCCCAAATGGACCTGATACCCGATCAATCGATGGCCGCTGCGAAATCGCGTGCACTTTTAGCCAGGAACTGGGGAAACGTTCAGGCGTCGCTTCTGGCATTCATCACGGCGTCGGCGCCTCAGTTCTCGGATGCCGAAGACTTGCTCCAAGAAGTCGCGGTCGAAGTTGCCGTTCGATTTGACGAATACGATCCCTCGCGGCCATTCCTGCCTTGGGCCTTGTGGATTGCCAAGATCAAACTGGCCGAGTTCTATCGCACTCGGCAGCGACGCCAGGTGGTGCTGATGGGTGAGTCGATGGACGCGCTCGCGGATGCCTGTGTCGCGGTTCAAGAAACACTCTCTGATGAGCAATTTGCGATTGAGAAATGTCTGGATCGATTGACCGACCGCTCGCGCGAGTTACTCAATCTGAGATACTCGGGAGGAATGAGTTCCTCTCAGATTGGCGATCACTTGGGGGTCTCGGTCCGATACGTCCGAGTGGCGCTCTCTCGAATCAGGACGGCTTTAACAGAGTGTGCACAGGCAGCCGTCAATGCTCGATCCGCTTAG
PROTEIN sequence
Length: 187
VSSQMDLIPDQSMAAAKSRALLARNWGNVQASLLAFITASAPQFSDAEDLLQEVAVEVAVRFDEYDPSRPFLPWALWIAKIKLAEFYRTRQRRQVVLMGESMDALADACVAVQETLSDEQFAIEKCLDRLTDRSRELLNLRYSGGMSSSQIGDHLGVSVRYVRVALSRIRTALTECAQAAVNARSA*