ggKbase home page

2019_SCN_bioreactor_t3_planktonic_scaffold_48149_6

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: comp(5541..6128)

Top 3 Functional Annotations

Value Algorithm Source
sigma-70 family RNA polymerase sigma factor n=1 Tax=Schlesneria paludicola RepID=UPI00029B00A0 similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 195.0
  • Bit_score: 359
  • Evalue 2.10e-96
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ADG66830.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 36.0
  • Coverage: 186.0
  • Bit_score: 131
  • Evalue 1.00e-27
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 39.1
  • Coverage: 192.0
  • Bit_score: 122
  • Evalue 7.20e-26

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 588
ATGGCTGAAACCCGCGTCTCTTTGATCCAGCGCGTCCGCAACAAATCTGACGAGGTTGCCTGGACCGAGTTCTTTACCATCTATCATCCGCTGCTGATGGCCTACTTTCGAAAACGCGGCGTCCTGGAACACGATGCGGCGGACCTGGTTCAAGATCTGTTCGCACGACTGGTTCCTGCCATGAGTCGCTTCGAATTCGATTCTGGCCGCGGACGATTTCGAACCTGGCTGTGGCATGTGACGCAGAATGCACTGACCGACTGGGCGCGTCGGCAAGCCACCCGCGATCGGGCCGAACAAGGCTGGATCGATCTCCATTCGGCGACCGACGCCGATGTGGCCCCCCGCGAGTGGGACGAGATGTACCGCCGCCGCATTCTGGAAGTCGGCATCGACAAGGTGCGTCAAACCACGCAGCCAGCAACCTGGGCGTGCTTTGAAGGAAAGATCTTGCAGGGACGTCCCGCCAGCGAAGTGGCCGCCGAGCTCGGTGTGTCGACAAATGTCGTCTATGTCAACGCGTCGCGCGTGCTGACGCGACTGCGGGAAGAACTCGCCACATACGAAGAATCGCTTGCACCCTCATGA
PROTEIN sequence
Length: 196
MAETRVSLIQRVRNKSDEVAWTEFFTIYHPLLMAYFRKRGVLEHDAADLVQDLFARLVPAMSRFEFDSGRGRFRTWLWHVTQNALTDWARRQATRDRAEQGWIDLHSATDADVAPREWDEMYRRRILEVGIDKVRQTTQPATWACFEGKILQGRPASEVAAELGVSTNVVYVNASRVLTRLREELATYEESLAPS*