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scn_reactorb_scaffold_62829_9

Organism: 2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: 7316..8188

Top 3 Functional Annotations

Value Algorithm Source
truB; tRNA pseudouridine synthase B (EC:5.4.99.25) similarity KEGG
DB: KEGG
  • Identity: 46.6
  • Coverage: 283.0
  • Bit_score: 263
  • Evalue 5.00e-68
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.6
  • Coverage: 283.0
  • Bit_score: 263
  • Evalue 2.50e-67
tRNA pseudouridine synthase B n=1 Tax=Dehalobacter sp. E1 RepID=UPI00031C23E8 similarity UNIREF
DB: UNIREF100
  • Identity: 56.2
  • Coverage: 290.0
  • Bit_score: 347
  • Evalue 1.20e-92

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Taxonomy

Gottschalkia acidurici → Gottschalkia → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 873
ATGAATGGTATATTAAATATTTTAAAGCCAACAGGTATGAGCTCTCATGATGTTGTGAGCTTTGTCAGAAAAGCTATAGGAATAAAAAAGGTTGGACATGCCGGAACTCTCGATCCGAATGTAGCCGGTGTGTTGCCTATATGTGTTGGTAAAGCAACAAAGTTTAGTGATATTTTGATAAATGGAGATAAGGAATATATCTGCGAAATAAAATTTGGGCAAAGTACTGATACTCAGGATATGTATGGAAGTATAGCTGAAGAATTAAAAGACTTTGAGTTTAACGAGGCAGAAATAATTGATGCCATCAATTCATTTAAAGGGATTATTTCACAGATACCTCCTGCATATTCAGCTGTTAAATTTAATGGAAAAAGGCTATATGAATATGCAAGACAGGATATAATAATTGAAAAGGAAGCTAGACAGGCACAAATCAAAGCTTTAGATATATTGAAAATTAACAATCCAAATGTGCTTATTAAGGTTAAATGTTCAAAGGGAACATATATGAGAACCCTTTGCCATGATATAGGCAAAAAACTCAGCATACCGGCACATATGGGGATTTTGATAAGAACACAGGCTAAAGGTTTGAAAATAGAGGACTCTATTAGCTTAGAGGACTTAAGCTTTTTTGCACAGATGAATAAAATGAAGGATTGTATAATTCCTGTAGATGATATTGTTCCTATGAAAAAAATTGTTGTAAATGAAAAATATTATGATAAACTTATAGTTGGAAATGAGGTATATTGTAAAACAGATGCTGATTTATCAGAAGAATTTTATGTATATTGCAAAGATATGCTTATCGGAATAGGTCATGCTGTAGATGAAAGACGTATAAAGATAAATAAAATGCTTATATAA
PROTEIN sequence
Length: 291
MNGILNILKPTGMSSHDVVSFVRKAIGIKKVGHAGTLDPNVAGVLPICVGKATKFSDILINGDKEYICEIKFGQSTDTQDMYGSIAEELKDFEFNEAEIIDAINSFKGIISQIPPAYSAVKFNGKRLYEYARQDIIIEKEARQAQIKALDILKINNPNVLIKVKCSKGTYMRTLCHDIGKKLSIPAHMGILIRTQAKGLKIEDSISLEDLSFFAQMNKMKDCIIPVDDIVPMKKIVVNEKYYDKLIVGNEVYCKTDADLSEEFYVYCKDMLIGIGHAVDERRIKINKMLI*