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cn_combo_scaffold_36_43

Organism: CN-SCN_Agrobacterium_19x

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: comp(47531..48052)

Top 3 Functional Annotations

Value Algorithm Source
FecI-like sigma-24 factor n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HH87_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 45.0
  • Coverage: 169.0
  • Bit_score: 150
  • Evalue 1.70e-33
Strain MEJ076 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03484.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacteriu similarity UNIPROT
DB: UniProtKB
  • Identity: 51.3
  • Coverage: 158.0
  • Bit_score: 158
  • Evalue 1.20e-35
FecI-like sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 48.2
  • Coverage: 168.0
  • Bit_score: 149
  • Evalue 1.10e-33

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Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 522
ATGACCGGCGATACGCAGAGGCTGGACGACGCCTTTCTCGGCATGCGGCAGTCGCTCTACCGGGCGATCCTGCGGATTGTGCGCGATGCGGCCGAGGCCGAGGAGTTGACGCACGACGCCTATCTGAGAGCGCGTCGGGCGCTCGACCAGGGCACGCCTGGCAATATCGAGGCCTTTCTCTGGCAGACAGCTCGCAATCTCGCCCTCGATCATCTTCGCCGGCGCAAGGTGCGCGCCCTGCATGAGGAGCGGGAATTCCAGGCGGCCGATACCGTCGTTGTCGCCGATCCCCAGCCGAGCATCGAAGATCAGGCCATCCAGCGCGACCTGGTCAAGGCCTTCAATCGGGCGCTGCTGACGCTTCCACCGCGCGCCCGTTCGGCCTGGTGCCTCAACCGGCTGGAAGGCCTTGCCTATCCCGAGATCGCCAGAAGGCTGGGTGTGTCGCCCAACACCGTGTTCAACGACATGAAGATGGCCATGGCCGTCCTCATGGAAATCCGGGAGAAAATGGAGCGATGA
PROTEIN sequence
Length: 174
MTGDTQRLDDAFLGMRQSLYRAILRIVRDAAEAEELTHDAYLRARRALDQGTPGNIEAFLWQTARNLALDHLRRRKVRALHEEREFQAADTVVVADPQPSIEDQAIQRDLVKAFNRALLTLPPRARSAWCLNRLEGLAYPEIARRLGVSPNTVFNDMKMAMAVLMEIREKMER*