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cn_combo_scaffold_923_23

Organism: CN-SCN_Agrobacterium_19x

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: 25256..26329

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY87_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 79.9
  • Coverage: 358.0
  • Bit_score: 606
  • Evalue 2.40e-170
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EYR77363.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Sh similarity UNIPROT
DB: UniProtKB
  • Identity: 79.9
  • Coverage: 358.0
  • Bit_score: 606
  • Evalue 3.30e-170
putative PotD, Spermidine/putrescine-binding periplasmic protein PotD similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 344.0
  • Bit_score: 554
  • Evalue 3.00e-155

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1074
ATGGAAAAGACCGTAACCGGCGGGCTCTCCCGCCGCCTGCTTCTTGCGACCGTTGCCATCTCTACCTTGTCCGGAAGGGCTCATGCCCAGGAGGAGCTGAATGCCCTCGTCTGGTGCGACCACACTGACCCGGCGCTGATCGAACCCTTCGAAAAGGCCAACAACGTCAAGGTCAATCTCAAGGAATATGAGGGAACCGGCGCTGGTCTCTCGATCGTCGAGCAGTCGCGACCGGGTGATTGGGATATCTTTGTCATCGACGGTGTCGACGTGCCTCGCGCCGTCGAAATGGATCTTCTCGCCGAAATTCCGGCCGACAAGCTGCCGATGGCCGACATCTTCCCGGAAGTCCGCATGGAAGCCAACAACACCAAGGACGGCAAGATCTACGCCGTGACGGAAAAGTTCGGCTACAACACGATTTCCTACGACAAGAGCAAGGTCGATCCGAAGGACATGGAAGACCTGTCGATCTTCTGGTCTGAGAAATACAAGGGCCGCATTGCGCTTTATGACTACTACCTGCCGATGATCGGTCTGACCGGCCTTGCCATCGGCAAGAACACCGCCGATCTGACCGAAGCCGATCTCCCCGCGATCAGGGAAAAACTGTTCGAGATGAAGAAGGTCTCGCGCCAGGTCAGTGATGTCGTCGCCTCGCAGACAGCACTTGTCAGCGGCGAAGTCGACATCATCCTCGGCGGCGGCGAATGGGTGACTGCAGGTCTCACGGCCGAAAAGCCGGACCTCGACTGGACCGTGCCGAAGCAGGGCGCCCTGCGCTGGGCACAGTCGATCGGCGTGTTCAAGGATTCCACCAAGCAGGATCTGGCCGTCAAGTTCGTGCAGTACATTCTGAGCCCAGAAGGCCAGGCTCGCCTTGCCACCTCGTCCTGCTACTGGGGCATGCCGGCAAATTCCAAGGCCGGTGAGCAGCTCACGGGCGAGCAGAAGACGGCGCTGCGCTGGGACAAGCAGCCCGAATACCTGAAGAACACCCAGCTCTATCCGGTAGCCAATGCCGATCTCGATGCGGCCATGCAGGATGTCTGGACGGAAATGCTGCAGCAATAA
PROTEIN sequence
Length: 358
MEKTVTGGLSRRLLLATVAISTLSGRAHAQEELNALVWCDHTDPALIEPFEKANNVKVNLKEYEGTGAGLSIVEQSRPGDWDIFVIDGVDVPRAVEMDLLAEIPADKLPMADIFPEVRMEANNTKDGKIYAVTEKFGYNTISYDKSKVDPKDMEDLSIFWSEKYKGRIALYDYYLPMIGLTGLAIGKNTADLTEADLPAIREKLFEMKKVSRQVSDVVASQTALVSGEVDIILGGGEWVTAGLTAEKPDLDWTVPKQGALRWAQSIGVFKDSTKQDLAVKFVQYILSPEGQARLATSSCYWGMPANSKAGEQLTGEQKTALRWDKQPEYLKNTQLYPVANADLDAAMQDVWTEMLQQ*