ggKbase home page

ACD49_7_30 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-) similarity KEGG
DB: KEGG
34.7 320.0 186 8.60e-45 hpk:Hprae_0732
Pseudouridine synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y836_9FIRM (db=UNIREF evalue=2.0e-39 bit_score=166.0 identity=34.29 coverage=76.3803680981595) similarity UNIREF
DB: UNIREF
34.29 76.38 166 2.00e-39 hpk:Hprae_0732
seg (db=Seg db_id=seg from=33 to=46) iprscan interpro
DB: Seg
null null null null hpk:Hprae_0732
seg (db=Seg db_id=seg from=17 to=30) iprscan interpro
DB: Seg
null null null null hpk:Hprae_0732
PSI_RLU (db=PatternScan db_id=PS01129 from=148 to=162 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: PatternScan
null null null 0.0 hpk:Hprae_0732
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=8 to=325 evalue=1.1e-56 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: HMMTigr
null null null 1.10e-56 hpk:Hprae_0732
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=85 to=323 evalue=5.8e-50 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: superfamily
null null null 5.80e-50 hpk:Hprae_0732
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=3 to=325 evalue=4.8e-49) iprscan interpro
DB: HMMPanther
null null null 4.80e-49 hpk:Hprae_0732
PseudoU_synth_2 (db=HMMPfam db_id=PF00849 from=102 to=261 evalue=7.8e-27 interpro_id=IPR006145 interpro_description=Pseudouridine synthase, RsuA and RluB/C/D/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: HMMPfam
null null null 7.80e-27 hpk:Hprae_0732
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=12 to=61 evalue=1.6e-06) iprscan interpro
DB: superfamily
null null null 1.60e-06 hpk:Hprae_0732
S4 (db=HMMPfam db_id=PF01479 from=13 to=58 evalue=1.5e-05 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
null null null 1.50e-05 hpk:Hprae_0732
S4 (db=ProfileScan db_id=PS50889 from=13 to=101 evalue=11.114 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 1.11e+01 hpk:Hprae_0732
Pseudouridine synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y836_9FIRM Tax=ACD49 UNIPROT
DB: UniProtKB
98.2 325.0 605 3.90e-170 ggdbv1_69255