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cn_combo_scaffold_1225_19

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(17050..17463)

Top 3 Functional Annotations

Value Algorithm Source
Putative ribonuclease VapC {ECO:0000313|EMBL:EYR79453.1}; EC=3.1.-.- {ECO:0000313|EMBL:EYR79453.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sh similarity UNIPROT
DB: UniProtKB
  • Identity: 55.8
  • Coverage: 138.0
  • Bit_score: 155
  • Evalue 5.90e-35
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D761D similarity UNIREF
DB: UNIREF100
  • Identity: 87.6
  • Coverage: 137.0
  • Bit_score: 245
  • Evalue 3.10e-62
PilT domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 139.0
  • Bit_score: 154
  • Evalue 2.70e-35

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 414
ATGACCTCGGTCCTCGTTGATTCCAACATCTTCCTGGACATGTTCCAGGGCGGTCCGGGGAGCCACTGGTCGAGAGGCAACCTCGTCAGGGAGGGAAGCGCCGGGGCGCTTGTCGTCAATCCGGTCATCTGGTCGGAGATATCGGTACGATTTCCGACCGAAGCAGATCTTGCGCAATCGCTGGCAGGCCTGACCGTCCACAAGGCGCAGATCCCCTTTGAGGCAGCCTTCGCCGCAGGTAAGGCGCATCTGGCATATCGCCAGAATGGCGGAACCCGCGAGCGCACCCTGCCCGATTTCCTCATCGGTGCGCATGCGCAGGTGGCGGGGCATCGGTTGTTGACGCGAGACGCCACGCGCTATCGCAGCTATTTCCCCGGCCTCGACATCATCGCACCAGATACCCATCCATGA
PROTEIN sequence
Length: 138
MTSVLVDSNIFLDMFQGGPGSHWSRGNLVREGSAGALVVNPVIWSEISVRFPTEADLAQSLAGLTVHKAQIPFEAAFAAGKAHLAYRQNGGTRERTLPDFLIGAHAQVAGHRLLTRDATRYRSYFPGLDIIAPDTHP*