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cn_combo_scaffold_3795_14

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(13366..15240)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=69974 species="Bacteria; Pro similarity UNIPROT
DB: UniProtKB
  • Identity: 89.6
  • Coverage: 608.0
  • Bit_score: 1081
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Hoeflea sp. 108 RepID=UPI00037B7195 similarity UNIREF
DB: UNIREF100
  • Identity: 95.7
  • Coverage: 607.0
  • Bit_score: 1136
  • Evalue 0.0
transcription repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 89.8
  • Coverage: 608.0
  • Bit_score: 1077
  • Evalue 0.0

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Taxonomy

Mesorhizobium plurifarium → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1875
CTCGGGTCCTCGATAGATTTCAAGAATCTCGGCCTGCTGATCATCGACGAGGAGCAGCTCGACAAGCTCGGCGGCGGCGCCTGGCAGTCGCGCAAGGCCAAGCTGAAGCGGCGCCTCCTGGAGATGGCGGGGCAGCTGATCAAGCTGGCGGCCGAGCGGCAGATGCGCGAGGCCCCGGTGATGAGCCCGCCCGAGGGCGTCTACGGCGAGTTCGCGGCGCGCTTCCCCTACGAGGAGACCGACGACCAGCAGAGCGCCATCGATCAGGTCATGGAAGACCTGGCCGACGGCAAGCCGATGGACCGCCTGATCTGCGGCGACGTCGGCTTCGGCAAGACCGAAGTGGCGCTGCGCGCGGCCTTCATCGCGGCCATGGAAGGCTTCCAGGTGGCGGTGGTGGTGCCGACGACGCTGTTGTCGCGCCAGCATTTCAAGACGTTCCAGCAGCGTTTCGCCGGCCTGCCCATCAACGTGCGCCAGGCGTCGCGCATGGTCGGCGCCAAGGAACTGGCCGAGACCAAGAAGGGCATCGCCGAGGGCACGGTCGACATCGTGGTCGGCACGCATGCGCTGCTCGGGTCCTCGATAGATTTCAAGAATCTCGGCCTGCTGATCATCGACGAGGAGCAGCATTTCGGCGTCAAGCACAAGGAGCGCCTGAAGGAACTCAAGAGCGACGTGCACGTGCTGACGCTGTCGGCGACGCCGATCCCGCGCACGCTGCAGTTGGCGCTGACGGGCGTCCGCGAGCTGTCGCTGATCGCCACGCCACCGGTCGACCGCATGGCGGTGCGCAGCTTCATTTCGCCCTTCGATCCGCTCGTCATCCGCGAGACGCTTTTGCGCGAACGCTATCGCGGCGGCCACAGCTTCTATGTCGTGCCGCGCATTTCCGACCTCGCCGAGATCCAGGAGTTCCTGCAGCAATCGGTGCCCGAACTGAAGGTGGCGGTGGCTCATGGCCAGATGCCGGCCGGCGAGCTCGACGACATCATGAACGCCTTCTACGACGGCCAGTACGATGTGCTTCTGTCGACGACGATCGTGGAATCGGGTCTCGACATCCCGACAGCCAACACGCTGATCGTGCATCGTGCCGACATGTTTGGCCTGGCCCAGCTCTACCAGTTGCGTGGCCGCGTCGGCCGCTCCAAGGTGCGCGCCTATGCGCTGTTCACGCTGCCGGCCAACCGCAAGCTGACCGACACCGCCGACCGCCGGCTCAAGGTGCTGCAGTCGCTGGACACGCTGGGTGCCGGCTTCCAGCTCGCCAGCCACGACCTCGACATCCGCGGCGCCGGCAACCTGCTCGGCGAGGAGCAGTCCGGCCACATCAAGGAAGTCGGCTTCGAGCTCTACCAGCAGATGCTGGAGGAAGCGGTGGCGGAACTTCGCGGCAGCGGCGAGGAGATCGACACGGGCTGGTCGCCGCTGATCACGGTCGGCACCGCCGTCATGATCCCGGAAAGCTACGTACCCGACCTGCAGCTTAGGCTGGCGCTGTACCGGCGCCTTGGCGACCTCGAGAACACCGAGGAGATCGACGGGTTCGGCGCCGAACTCATCGACCGCTTCGGGCCGCTGCCGGATGAGGTCAAGCATCTGCTCAAGATCGTCTTCATCAAGGCGCTGTGCCGCAAGGCCAACGTCGAGAAGCTCGATGCCGGGCCGAAGGGCGTGGTGGTGCAGTTCCGCAAGAAGGAATTCGCCAACCCCGCCGGGCTGGTGGGCTTCATCGCCGAACAGGGCTCGCTGGCCAAGATCAGGCCTGACCACAGCATCGTCTTCCAGCGCGACTGGCCGAATGCCGAAAAGCGCCTGGCAGGCTCGGCAGTGATCATGACGCAATTGGCGAAGCTGGCGGATGCTGCTTGA
PROTEIN sequence
Length: 625
LGSSIDFKNLGLLIIDEEQLDKLGGGAWQSRKAKLKRRLLEMAGQLIKLAAERQMREAPVMSPPEGVYGEFAARFPYEETDDQQSAIDQVMEDLADGKPMDRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLSRQHFKTFQQRFAGLPINVRQASRMVGAKELAETKKGIAEGTVDIVVGTHALLGSSIDFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMAVRSFISPFDPLVIRETLLRERYRGGHSFYVVPRISDLAEIQEFLQQSVPELKVAVAHGQMPAGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAYALFTLPANRKLTDTADRRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELRGSGEEIDTGWSPLITVGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDGFGAELIDRFGPLPDEVKHLLKIVFIKALCRKANVEKLDAGPKGVVVQFRKKEFANPAGLVGFIAEQGSLAKIRPDHSIVFQRDWPNAEKRLAGSAVIMTQLAKLADAA*