| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKT5_MOOTA (db=UNIREF evalue=4.0e-95 bit_score=352.0 identity=51.6 coverage=67.065868263473) | similarity |
UNIREF
DB: UNIREF |
51.6 | 67.07 | 352 | 4.00e-95 | css:Cst_c13750 |
| rpoD1; RNA polymerase sigma factor RpoD | rbh |
KEGG
DB: KEGG |
53.5 | 342.0 | 337 | 6.10e-90 | css:Cst_c13750 |
| rpoD1; RNA polymerase sigma factor RpoD | similarity |
KEGG
DB: KEGG |
53.5 | 342.0 | 337 | 6.10e-90 | css:Cst_c13750 |
| seg (db=Seg db_id=seg from=15 to=39) | iprscan |
interpro
DB: Seg |
null | null | null | null | css:Cst_c13750 |
| seg (db=Seg db_id=seg from=55 to=69) | iprscan |
interpro
DB: Seg |
null | null | null | null | css:Cst_c13750 |
| seg (db=Seg db_id=seg from=83 to=120) | iprscan |
interpro
DB: Seg |
null | null | null | null | css:Cst_c13750 |
| seg (db=Seg db_id=seg from=3 to=13) | iprscan |
interpro
DB: Seg |
null | null | null | null | css:Cst_c13750 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=229 to=338 evalue=5.4e-44 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 5.47e-44 | css:Cst_c13750 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=68 to=337 evalue=1.3e-42) | iprscan |
interpro
DB: Gene3D |
null | null | null | 1.30e-42 | css:Cst_c13750 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=476 to=487 evalue=2.5e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.50e-25 | css:Cst_c13750 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=461 to=476 evalue=2.5e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.50e-25 | css:Cst_c13750 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=440 to=452 evalue=2.5e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.50e-25 | css:Cst_c13750 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=292 to=305 evalue=2.5e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.50e-25 | css:Cst_c13750 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=316 to=324 evalue=2.5e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.50e-25 | css:Cst_c13750 |
| Sigma70_r3 (db=HMMPfam db_id=PF04539 from=347 to=423 evalue=2.8e-22 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.80e-22 | css:Cst_c13750 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=341 to=415 evalue=3.6e-21 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.60e-21 | css:Cst_c13750 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=398 to=500 evalue=6.2e-20 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 6.20e-20 | css:Cst_c13750 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=422 to=500 evalue=1.9e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 1.90e-17 | css:Cst_c13750 |
| Sigma70_r2 (db=HMMPfam db_id=PF04542 from=268 to=338 evalue=3.2e-17 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.20e-17 | css:Cst_c13750 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=341 to=392 evalue=3.2e-14 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 3.20e-14 | css:Cst_c13750 |
| Sigma70_r4 (db=HMMPfam db_id=PF04545 from=437 to=488 evalue=7.3e-14 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 7.30e-14 | css:Cst_c13750 |
| sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=263 to=491 evalue=2.7e-12 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 2.70e-12 | css:Cst_c13750 |
| Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=229 to=263 evalue=2.2e-09 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.20e-09 | css:Cst_c13750 |
| Sigma70_r1_1 (db=HMMPfam db_id=PF03979 from=154 to=220 evalue=4.7e-06 interpro_id=IPR007127 interpro_description=RNA polymerase sigma factor 70, region 1.1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription regulator activity (GO:0030528), Biological Process: regulation of transcription (GO:0045449)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 4.70e-06 | css:Cst_c13750 |
| Uncharacterized protein {ECO:0000313|EMBL:EKE26289.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;" |
UNIPROT
DB: UniProtKB |
95.0 | 500.0 | 893 | 1.10e-256 | K2G868_9BACT | |
| mta:Moth_0624 RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor alias=ACD2_C00018G00015,ACD2_838.23489.59G0015,ACD2_838.23489.59_15 id=34611 tax=ACD2 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5 | similarity |
UNIREF
DB: UNIREF90 |
78.5 | null | 794 | 1.60e-227 | css:Cst_c13750 |
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