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berkeley_reactor_200306_biofilm_scaffold_6339_6

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 5303..6514

Top 3 Functional Annotations

Value Algorithm Source
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.2
  • Coverage: 403.0
  • Bit_score: 570
  • Evalue 1.70e-159
Diaminopimelate decarboxylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NRK7_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 68.2
  • Coverage: 403.0
  • Bit_score: 570
  • Evalue 1.20e-159
diaminopimelate decarboxylase similarity KEGG
DB: KEGG
  • Identity: 68.2
  • Coverage: 403.0
  • Bit_score: 570
  • Evalue 3.50e-160

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Taxonomy

Niabella soli → Niabella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1212
ATGTCTGAGCAGCTTTCGCCGGAATATCTTGTCAGTCTCGGTCAGCAATTCGGCACACCCTTATACGTCTACCACGCAGAAAAGATAAAAGAACAATACAATAAGCTCACCACCGCCTTCAGCCGCAGCAAGCCCGTGTTCTTCTACGCCTGCAAGGCCCTCACCAATATCAACATACTCAGGTATATCAATCGGCTGGGCGCCAATGTCGACTGCAGCTCCATCAATGAAGTAAAGCTGGCCATCCAGGCAGGTTTCGCTCCCGAAAGGATCCTTTATACGTCCAATGGGATTGCTTTTGAAGAGATCATCGAAGCCAGGGACCTGGGCGTCATCATCAACATCGACAGCCTGTCCAACCTGGAAAAGTTCGGTCAGCATTACGGTCATAGCTATCCGGTAGGCATCCGCCTACGCCCCAATATCATGGCGGGTGGTAATCTCAAGATCTCCACCGGTCACGACAAAAGCAAGTTCGGCATACCCGTAGATCAGATCGGGAAAGTACTGGAACTGGTAAAAAAATACGATCTCCATATCGCAGACCTGCACATCCACACAGGCAGCGAGATCAAGGACGTGGAAGTATTTGTAAAAGGGATCGAGGTCCTCTTCGATATCATCCCGCATTTCACCGAGCTTAGATTCATCGACCTGGGCGGGGGCTTCAAAGTGCCCTACAAAGATGGCGATGTAGAGACGGATATACAGCTGCTGGCTGCGAAGGTCGAAGAAGCCTTTGCCAGTCATCCAAATCCCGGAGGCCGTCCCCTGCAGGTGTGGTTCGAGCCGGGTAAGTTCATGGTTAGCGAGTGCGGCTATTTTATTACAAAGGTGAACGTAATGAAGGAGACGGCCGCCGCCACTTTCGTCAGCGTCGACAGCGGCTTCAACCACCTTATCCGCCCCATGTTCTATGATGCATATCACCGGATAGAAAATATCAGCAACCCCAATGGTACGCCAAAACGATATTCTGTCGTGGGTAATATATGCGAGACGGATACTTTTGCCTGGGACCGAACCATCAATGAAGTACATGAAGGTGACTACCTCGTATTCTACAACGCCGGTGCATATGGATTTGAAATGTCTTCCAACTTCAATTCACGCTACAAACCCGCCGAAGTGATGGTAAAAGAGGGAGAAGCCCATCTCATCCGCAGAAGGGATACTTTCGATGACCTTCTCCGCAACCAGATCATTCTTTAA
PROTEIN sequence
Length: 404
MSEQLSPEYLVSLGQQFGTPLYVYHAEKIKEQYNKLTTAFSRSKPVFFYACKALTNINILRYINRLGANVDCSSINEVKLAIQAGFAPERILYTSNGIAFEEIIEARDLGVIINIDSLSNLEKFGQHYGHSYPVGIRLRPNIMAGGNLKISTGHDKSKFGIPVDQIGKVLELVKKYDLHIADLHIHTGSEIKDVEVFVKGIEVLFDIIPHFTELRFIDLGGGFKVPYKDGDVETDIQLLAAKVEEAFASHPNPGGRPLQVWFEPGKFMVSECGYFITKVNVMKETAAATFVSVDSGFNHLIRPMFYDAYHRIENISNPNGTPKRYSVVGNICETDTFAWDRTINEVHEGDYLVFYNAGAYGFEMSSNFNSRYKPAEVMVKEGEAHLIRRRDTFDDLLRNQIIL*