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berkeley_reactor_200306_biofilm_scaffold_6339_13

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 17213..18238

Top 3 Functional Annotations

Value Algorithm Source
Inner membrane protein ypdA n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GET9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 37.0
  • Coverage: 354.0
  • Bit_score: 229
  • Evalue 2.60e-57
Inner membrane protein ypdA {ECO:0000313|EMBL:CCH52414.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 37.0
  • Coverage: 354.0
  • Bit_score: 229
  • Evalue 3.60e-57
signal transduction histidine kinase LytS similarity KEGG
DB: KEGG
  • Identity: 36.0
  • Coverage: 358.0
  • Bit_score: 214
  • Evalue 2.40e-53

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Taxonomy

Fibrisoma limi → Fibrisoma → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1026
ATGAAACGCCTTTTTTCCAGGTATAAATGGCACCTCCTTTTGTGGGCGGTGTACTTCATATTCTGGATCTTTTTTTCAGCCTATCAATACAACAATACGGTTGCGATGGCAGCGCTGTATACGTTTGCCTGGTTTACCGGCCAGGCCGGCAGCGCCTATGTCACAGTCTATTGGCTGGTGCCCGCCTTTTTCAGCCGCAGGCGGTATGTCGTCTTCGCCCTGCTTTACCTGCTGGTATTGCTCTTGTCTTCGGCCCTCATCCTGGGCATGGTCATCCTGATCCAGCGGATGCGGCATCTACCCTTGCCCTCACCCATGGGCAGGGAGATCTCTTATCTGTTGATAGGCAGCTGCTACACCTCAGTGCTGGCAATGGCGATAAAGGCCATTCGGGACAAGATCAGGGGAGACAGAAGGACAGCCCTCCTGGAGAAGGAAAAGACGGACAGCGAGCTCCGCTTTCTCAAATCCCAGCTGAATCCCCACTTCCTCTTCAATGCCATCAATAGCATATACGTGCTGATAAAGAAGGACCCCGACTTCGCAGGCCTCACCCTGGTGAAATTTGCGGACATGCTGCGGTACCAGCTGTACGAATGCAATACGGATGTCATCCCGATTGAAAAGGAGCTCAGCTATCTTGACAACTATATACAATTGGAGAAGCTGCGGAAAGGGGACCTCATCCAGACAAACTATCATGTCAGCCCATCCACCGGCAAATTCTCCATCGCACCCCTTCTGCTGATCCCCTTTGTCGAAAATGCCTTCAAATACGTATCCAATTGTCCCGAGAAGAATAACTTTGTCACCGTAGATCTCAATTTCCAGGACAATATCTTCGAGCTGAGCGTGGAGAACAGCATAGACGCTGACGCGATGATGCCAAAGGAAAAGACCTGGGGAGGGATAGGGTTGGAGAATGTCAGACGACGGCTGCAGCTGATCTATGACGGTCGCCATGCCCTGGATATCAGTACCAGGGACGATGTCTTCTCCATCCTGCTCACGATCAAGGTTGCATGA
PROTEIN sequence
Length: 342
MKRLFSRYKWHLLLWAVYFIFWIFFSAYQYNNTVAMAALYTFAWFTGQAGSAYVTVYWLVPAFFSRRRYVVFALLYLLVLLLSSALILGMVILIQRMRHLPLPSPMGREISYLLIGSCYTSVLAMAIKAIRDKIRGDRRTALLEKEKTDSELRFLKSQLNPHFLFNAINSIYVLIKKDPDFAGLTLVKFADMLRYQLYECNTDVIPIEKELSYLDNYIQLEKLRKGDLIQTNYHVSPSTGKFSIAPLLLIPFVENAFKYVSNCPEKNNFVTVDLNFQDNIFELSVENSIDADAMMPKEKTWGGIGLENVRRRLQLIYDGRHALDISTRDDVFSILLTIKVA*