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berkeley_reactor_200306_biofilm_scaffold_6339_20

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(26702..27325)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, TetR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK72_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 51.8
  • Coverage: 197.0
  • Bit_score: 198
  • Evalue 3.90e-48
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEF59710.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.8
  • Coverage: 197.0
  • Bit_score: 198
  • Evalue 5.40e-48
transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 47.4
  • Coverage: 196.0
  • Bit_score: 196
  • Evalue 5.40e-48

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 624
ATGAACGAATATTCATTTATATTTGTCGTACCCATGCGGACCAGAGACGAAAATAAAATAGAGGCCATTTACCGGGAAGCCCTGAAAATGATTGTAAATGAAGGGTTTGAAGGGTTAAGCATGCAGCGACTGGCCAAGGCGGCCGGGATCTCTCCCGCCACTATCTATATTTATTTCAAGGACAAGGAGGATCTGCTGCTGCAGCTGCACCGGCGGGAACTGGATGTATACTTTGCCTATATTCTGGATGGGTTCGATCCCGAAATGGATTTTGCCACCGGATTAGCTGTTCAATGGAAGCGGCGGGCGCAATATGTCATCGATAACCCGGACAAGGCTCATTTCATGGAGCACTTCAAGTTCAGTCCCTTATTGTCCAAGTCTGTCACCCCTAAAGACAAACGTTTTTCGGAGATCATGGAACGGTTCGCCCGAAAGGCCATTGCGAATAAGGAGCTGACACCCATGCCTTTCGAAGTGTACTGGTCCATTACATTCGCCCCGTTGTACAACCTGGTACGGTTCCATAAAGCCGGAATGAACCAAGCCGGTGAAAAATTCGAGCTGACGGACGAGATGTTGATGCAGACACTTTCGCTTGTGCTGAAAGCGCTAAAACCTTAA
PROTEIN sequence
Length: 208
MNEYSFIFVVPMRTRDENKIEAIYREALKMIVNEGFEGLSMQRLAKAAGISPATIYIYFKDKEDLLLQLHRRELDVYFAYILDGFDPEMDFATGLAVQWKRRAQYVIDNPDKAHFMEHFKFSPLLSKSVTPKDKRFSEIMERFARKAIANKELTPMPFEVYWSITFAPLYNLVRFHKAGMNQAGEKFELTDEMLMQTLSLVLKALKP*