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berkeley_reactor_200306_biofilm_scaffold_29726_12

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 11648..12622

Top 3 Functional Annotations

Value Algorithm Source
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGW8_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 48.0
  • Coverage: 321.0
  • Bit_score: 298
  • Evalue 4.30e-78
anti-FecI sigma factor FecR similarity KEGG
DB: KEGG
  • Identity: 48.0
  • Coverage: 321.0
  • Bit_score: 298
  • Evalue 1.20e-78
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEV99570.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.0
  • Coverage: 321.0
  • Bit_score: 298
  • Evalue 6.00e-78

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 975
GTGGAAGAAAGAAATATACGACAAATACTCCGACGCTATCTGCTCGGTAATGCTGATGAGAAAGATACAAATGCGGTCGATGGCTGGTACAGGTCATTCGACGAGCAAGCACCGGTGACCTTGTCGCCGGAAGAGTCCGATGCCGCCAGGCAGGAGATCTGGGACAAGATCTCGCCAGTGCTGGGTGAGGACAACCCCCGCACCGGCGACAGCCCGGCAGAAGGCAGGGTCCGTCGCCTTCCCTCCTGGCTCAAAGTGGCAGCCGTCATCCTCATCATTGCCGGCGGCGCAGGCACTTACCTGCTGCTGAACAAGAAGCCGCACAATGAAGCCATCGCCTACACCACTTACACCACGGGCATGGGTGAAAAGAAAAAGATCACGCTCCCCGACAGCAGCATCATCACCCTCGACGCTGGCACTACCCTCCGTATACAAGACGATTTTTCAACAGAGAGAAAGATCGAAATGGTGGACGGCCAGGCATTCTTCGATGTAAAGACGGATGCGCACCGTCCCTTCATCATCCGCAGCGAAGGACTGACAACCACTGTGCTGGGCACCTCCTTCACCGTCTCCGCCTTTAAAGGTCTTAATAACATCAGCATCGGTGTCGTCACCGGTAAGGTGCGTGTATCCTCGGATACATCGGCGCTGAGCGTACTGGAGAAAGAAGAAGAGCTGGTGTTCAATAAAGCCAATAGAAAATATAAGAAGGTCCCGTTGGATGAAAGCCTCACTGCCTGGCGGGAAGGCCGGCTGCTGATGAATGATCTGACCTTCGATGAAATGGCTGTGATGCTGAAAAAGAACTATGGCGTAGATGTATTGCCAAGCGACGAATCTATCAGGAGGACAAGATATACAACTGAGCTGCTGACTGGCATGAAGCCGCTACAGGCCATACAGGTGCTGGCCGCTATTCACAATCTCAGGATCCGGGAAAAAGATCACCAGATCATCCTGGCAAAATAA
PROTEIN sequence
Length: 325
VEERNIRQILRRYLLGNADEKDTNAVDGWYRSFDEQAPVTLSPEESDAARQEIWDKISPVLGEDNPRTGDSPAEGRVRRLPSWLKVAAVILIIAGGAGTYLLLNKKPHNEAIAYTTYTTGMGEKKKITLPDSSIITLDAGTTLRIQDDFSTERKIEMVDGQAFFDVKTDAHRPFIIRSEGLTTTVLGTSFTVSAFKGLNNISIGVVTGKVRVSSDTSALSVLEKEEELVFNKANRKYKKVPLDESLTAWREGRLLMNDLTFDEMAVMLKKNYGVDVLPSDESIRRTRYTTELLTGMKPLQAIQVLAAIHNLRIREKDHQIILAK*