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berkeley_reactor_200306_biofilm_scaffold_94705_25

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 29869..30627

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase {ECO:0000313|EMBL:AEW00958.1}; EC=1.1.1.25 {ECO:0000313|EMBL:AEW00958.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.7
  • Coverage: 244.0
  • Bit_score: 311
  • Evalue 9.10e-82
Shikimate dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNN2_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 62.7
  • Coverage: 244.0
  • Bit_score: 311
  • Evalue 6.50e-82
shikimate dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 62.7
  • Coverage: 244.0
  • Bit_score: 311
  • Evalue 1.80e-82

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 759
ATGAGAACGTTCGGCCTGATAGGATATCCACTTTCACATTCCTTCTCGCAGAAATATTTTACAGAGAAATTTCAAAAATTGGGCATTACGGATGCCAGGTATGAACTGTATTCCATCGAGACGATACATGGGCTGCGCGCTGTATTGCAGGAGCCCACGCTTTGCGGACTGAATGTAACCATCCCTTATAAACAGGCGGTGATGTCTTTCCTGGATATCGTGGACCCGGTGGTACAGGCCATCGGCGCTTGCAATTGCATCCGGATACAGGACGGCAAGCTGACAGGTTACAATACGGATGTGGTCGGTTTTGAAGATTCACTGGTGTGTAAGCTCGGGCCTGCGCATAAGAGGGCGTTGATACTGGGTACGGGCGGTGCGTCGAAGGCTGTGGAGTATGTGCTCAGAAAGCTGGGGATCGCTTACTGTTATGTATCGAGAGGCGGAGGGAAGGGCGCGTTACGTTACGAGGAGGTGGATAAGGAGATAATGTATGAGCATACGCTGGTGATCAATACGACGCCCCTGGGTATGTATCCAAAAGTGGAGGAATGTCCTCCATTGCCCTACGATGCCATCGGACCACAGCACCTTTTATTTGACCTGGTGTACAATCCTGCGGTGACCATGTTCCTGCGGTTGGGGCAGGAGCGGGGTGCTGCCACCGAGAACGGTTATGATATGCTGGTTGGGCAGGCGGAGGAAAGCTGGCGCATTTGGAATAGCTGCGAGCTACGAGCTGCGAGCTGTGAGCTGTGA
PROTEIN sequence
Length: 253
MRTFGLIGYPLSHSFSQKYFTEKFQKLGITDARYELYSIETIHGLRAVLQEPTLCGLNVTIPYKQAVMSFLDIVDPVVQAIGACNCIRIQDGKLTGYNTDVVGFEDSLVCKLGPAHKRALILGTGGASKAVEYVLRKLGIAYCYVSRGGGKGALRYEEVDKEIMYEHTLVINTTPLGMYPKVEECPPLPYDAIGPQHLLFDLVYNPAVTMFLRLGQERGAATENGYDMLVGQAEESWRIWNSCELRAASCEL*