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berkeley_reactor_200306_planktonic_scaffold_58787_11

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(10799..12766)

Top 3 Functional Annotations

Value Algorithm Source
TonB-dependent receptor plug n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIB6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 52.9
  • Coverage: 656.0
  • Bit_score: 686
  • Evalue 1.90e-194
TonB-dependent receptor plug {ECO:0000313|EMBL:EEF60377.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.9
  • Coverage: 656.0
  • Bit_score: 686
  • Evalue 2.70e-194
ligand-gated TonB-dependent outer membrane channel similarity KEGG
DB: KEGG
  • Identity: 47.3
  • Coverage: 659.0
  • Bit_score: 591
  • Evalue 1.80e-166

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1968
ATGGCGGATGGCATGGTGAGCACCAACACCACCGACTCCAATTTATCGAAACTGGCTGACATGGACATCAGCCAGTTAATGCAGGTCAAGGTATCCATTCTCGGGCCATCGCAAAGTGTTTCGCGGACGCCAGCAGCAGTTTCGGTTGTGACGCAAGACGACATCAAACGATCCGGCGCCAGGAATTTCCCCGAAGCATTGCGCTTGGTGCCCGGAATGGACGTGGCCCAGGTGGACGCCAGCCAGTGGGCAGTGAGCGCGCGGGGGTTCAATGACACCTTCGCCAACAAGCTGCTGGTGATGCAGGATGGACGCAGCATTTATACCCCCTTATTTTCCGGCGTCTTTTGGGATGTTCAGGGCACGATGATGGAGGACATTGACCATATCGAAGTCGTGCGCGGACCGGGAGCCACATTGTGGGGTGCCAACGCCATGAATGGCGTTATCAACATTATCACCAAGAATGCGGAGGACACACAGGGGCTGCTCACTTCCGCCGGCGGCGGCAATCAGGACCGGGGCTTTGCGGAAGCACGCTACGGTGGAGCCATCAACAGCAACGCATTTTATCGCGTTTATGGGATGTATGAAAATCACGCCTCGACGGATATGACCGACGGCAGCAGTGCCGACAATTCGTGGCAGCTTGCACGAGCTGGATTCCGCACGGACTGGAACCCGAAAAGCGACAACACGTTCACTTTTCAAGGCGATGGTTATGCGGGTTGGTTTGACCAGGTCTTCGGTATTCTTGGCCCTCCGCCAACCTACACGACGATCTCGCACGAAGAAATGAAAGCCGCGGGCGGAAATGTGTTGGGGCGCTGGACACGTGACTTTTCGGACACGTCCAATTTAAAATTACAGGCATATTACGATTATACTGATCGGAACGCGCCGGATTTTTTTGATGAACAGCGTCATACACTTGATCTGGACCTGAAACATCAATTCGCGCTGAATGACCGGAACAAAATTGTGTGCGGACTTGGCTACCGGTTGACCGTGGACTCGGAACAAAACAGTCCGACGGTTTCCTTCAACCCGACCAGCGAAACCCTCAACTTGTTCGATGGATTTGCGCAGGATGAACTGGCCATCATAAAAAACCGGCTGAGCCTGACGCTCGGAACGAAGCTCGAACACAACGACTACACCGGTTTTGAGGTGGAGCCCGGCGCGCGGCTTTTGTGGACACCCACGGCGCACCAAACGTTCTGGGCTTCGGTGTCACGGGCGGTGCGCACGCCGTCGCGCGCGGAAGAAACGGTTAGAATTACCCAGGCGCAGCAGGTGCCTCCACCGGCTCCACCTGGCATATATGTGCCCGTGACCATTTCCGGAACGAACAGCTTTGACTCGGAGGACATGATCGCCTACGAGATCGGCTATCGGGCTGCCCCGGTTGACCATCTTTCCCTGGACTTGACCGCGTTCTACAACGATTACAATCATCTGCGCAGTGAGCAACAAAGCCCAGGGAATCCGACTCAATTCTACGTAGGCAATGCACTGTTCGGGCGAACTTATGGTTTTGAAGCCACGGCGACGTGGCAAGTGACAGAACAATGGCGTTTGCAGCCGACCTATTCCATGTTGCAAATGGATTTTTACGCTCACCCGGAGAACGGTTACACCGACAACAACTCGGTGGCGGAAATTGAAGGTTCCAGTCCGCAAAACCAGTTTTCGCTTCGTTCATCCCTCGACCTGCCGCACGGAGTGACGTTCGACACGGCACTGCGTTACGTGGACAACCTGCCTTATTTCAACATTGACAGTTATTTTGAACTCAACGCGCGGCTGGCGTGGCGGATCAACAAAAACCTAGAAGTTTCGCTCGTGGGACAAAATCTCCTTCATGACCGGCACGCGGAGTTTGGGCCGACCGTTATCAATACACAGAACGGCATGATTTCGGAAATTCCTCGCAGCGTTTATGCACAAATCACGTGGCGGTTTTAG
PROTEIN sequence
Length: 656
MADGMVSTNTTDSNLSKLADMDISQLMQVKVSILGPSQSVSRTPAAVSVVTQDDIKRSGARNFPEALRLVPGMDVAQVDASQWAVSARGFNDTFANKLLVMQDGRSIYTPLFSGVFWDVQGTMMEDIDHIEVVRGPGATLWGANAMNGVINIITKNAEDTQGLLTSAGGGNQDRGFAEARYGGAINSNAFYRVYGMYENHASTDMTDGSSADNSWQLARAGFRTDWNPKSDNTFTFQGDGYAGWFDQVFGILGPPPTYTTISHEEMKAAGGNVLGRWTRDFSDTSNLKLQAYYDYTDRNAPDFFDEQRHTLDLDLKHQFALNDRNKIVCGLGYRLTVDSEQNSPTVSFNPTSETLNLFDGFAQDELAIIKNRLSLTLGTKLEHNDYTGFEVEPGARLLWTPTAHQTFWASVSRAVRTPSRAEETVRITQAQQVPPPAPPGIYVPVTISGTNSFDSEDMIAYEIGYRAAPVDHLSLDLTAFYNDYNHLRSEQQSPGNPTQFYVGNALFGRTYGFEATATWQVTEQWRLQPTYSMLQMDFYAHPENGYTDNNSVAEIEGSSPQNQFSLRSSLDLPHGVTFDTALRYVDNLPYFNIDSYFELNARLAWRINKNLEVSLVGQNLLHDRHAEFGPTVINTQNGMISEIPRSVYAQITWRF*