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berkeley_reactor_200306_planktonic_scaffold_207894_35

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(34796..35620)

Top 3 Functional Annotations

Value Algorithm Source
Peptidoglycan-binding LysM n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS56_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 45.3
  • Coverage: 265.0
  • Bit_score: 224
  • Evalue 8.70e-56
Peptidoglycan-binding LysM {ECO:0000313|EMBL:EEF57311.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.3
  • Coverage: 265.0
  • Bit_score: 224
  • Evalue 1.20e-55
peptidoglycan-binding lysin domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 29.8
  • Coverage: 171.0
  • Bit_score: 72
  • Evalue 2.00e-10

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 825
ATGTCATTTTTTGGCAAGTTCAGCTTGTGCGTGCTGTTGGTGGCGGTTTTGGCGGCGGTCAGCGGATGTTCGCCGGCCGGTTATAGTCAGGCGGATGATGAAAAAGAACCACACTATGTCCTCGGCAAAAGCCGGGTGAATGCGATGGATTATTCCGGCGCGGCGGACGCGTTCGCCGAAGCGCTGGAAGTCAATCCGCGTTCGGCGCCGGCGCATTTTCAGCTTGCCTGTCTGTATGACACCAAGCTTGCCGACCCGGCGGCGGCCATTTATCACTACCAGCAATATCTCCGGCTGAGTCCGCACGCGGACAATGCGGAGGTCATCCGCCAGCGAATTTACAGTTGCAAACAGCAACTGGCCGCCGACGTGATGCCCTTGCCCAGCGCGCCGGCGGCGCAGCAGCAAATCGAAAAACTCGCGGAACAGAACCAGCAGTTGCAGGCCACGATTGATCATCTGAACGGCGTCATCAAACGTTGGAACGCCTATTACGCGTCGCTGCCAGATTCGGTCAAAAATTCGCCCGGCGAACCGGCGGCCGGCGCCGAACCCACCGCTTATTCCGCCGGCAGCAGCATGCCGGACGACGTTTCTTCCGCGACCGTCGCGCGCGCGACTGCCACCGCTGCGGCCCCCAGCCGGACCGTTGTTTCCCGCGCCGCACCGGCGCCCGCCAATCCGCGCACGCACACCGTCAAGGCCGGGGAAACCATGGCCAGCATCGCGCGCCAGTCCGGCATCAGCCTGACCGCCCTCCAGGCGGCGAACCCGGGAGTTGTTCCCAAAAAAATGCGGGTTGGACAGGTGCTGAATCTGCCGTAA
PROTEIN sequence
Length: 275
MSFFGKFSLCVLLVAVLAAVSGCSPAGYSQADDEKEPHYVLGKSRVNAMDYSGAADAFAEALEVNPRSAPAHFQLACLYDTKLADPAAAIYHYQQYLRLSPHADNAEVIRQRIYSCKQQLAADVMPLPSAPAAQQQIEKLAEQNQQLQATIDHLNGVIKRWNAYYASLPDSVKNSPGEPAAGAEPTAYSAGSSMPDDVSSATVARATATAAAPSRTVVSRAAPAPANPRTHTVKAGETMASIARQSGISLTALQAANPGVVPKKMRVGQVLNLP*