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berkeley_reactor_200306_planktonic_scaffold_340111_2

Organism: 2019_SCN_bioreactor_200211_planktonic_Micrococcales_71_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 1322..2194

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase substrate binding domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3D6_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 73.6
  • Coverage: 284.0
  • Bit_score: 399
  • Evalue 2.10e-108
Shikimate dehydrogenase substrate binding domain protein {ECO:0000313|EMBL:EIC08686.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.6
  • Coverage: 284.0
  • Bit_score: 399
  • Evalue 2.90e-108
shikimate 5-dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 54.5
  • Coverage: 277.0
  • Bit_score: 273
  • Evalue 6.40e-71

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Taxonomy

Microbacterium laevaniformans → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 873
GTGACGACTGCTGACGCCTCGACCGCCTCCGCGGTGCTGCCCTCGGGCACCGCTCTGGAGGTGTGGGGCGACCCCATCGACCACAGCCTGTCGCCGCGGCTGCATCGCGCCGCGTACGCGCGGCTCGGCCTCGACTGGACCTACGGTCGGCGGCGCGTGGCCGCGGCCGACCTCCGCACCGTTCTGGACGGCCTGCCGCCCGCTTTCCGCGGACTGTCGCTGACCTTCCCGCTGAAGGCCGAGGCGTTCGCCGCGGCCACCCGCCGCGACCGCACCGCGACGCTCACCGGTGCCGTCAACACGCTCGTGCTCACCGAAAGGGACCGGGTCGGGTTCAACACCGACGTCGGCGGCATCGTCGCGGACGTGCGCGCGCAGGGCGTCGACGGCGTGGAACGGGCGCGCATCGTCGGCGCCGGCGCGACGGCGACATCCGCCCTCGTCGCCTTGGCCCAGCTGGGCGCGCAGACGGTCGAGGTCGTCGCGCGGCGCCCCGAGGCGGCCGCCGCCCTCCTCGAGCTGGGCGCGCGCCTGTCGGTGCGGGTGACGACGGCCCCGACGGATGCCGAGGCCCCGGCATCCGTGGATCTCACCGTCTCGACGCTGCCGGGCGGCACCACCCTCGCCGACGAGACCTGCCGCCGCCTGGCCGCCGGCGGCGGGCTCCTCTACGACGTCGTCTACGGGCACTGGCCCACCGATCTCGCCCGGGCGTGGGAGGACGCCGGCGCTCCCGCCGTCGACGGGCGCGGGATGCTGCTGCACCAGGCGGTGCTGCAGATCCGGGCGTTCCTGACGGGGGATCCGGAAGTGCCGCTCGCCGACGAGGTTGCCGTCGTGGACGTCATGGCCCGCGCGCTCGTGGGAGACTAG
PROTEIN sequence
Length: 291
VTTADASTASAVLPSGTALEVWGDPIDHSLSPRLHRAAYARLGLDWTYGRRRVAAADLRTVLDGLPPAFRGLSLTFPLKAEAFAAATRRDRTATLTGAVNTLVLTERDRVGFNTDVGGIVADVRAQGVDGVERARIVGAGATATSALVALAQLGAQTVEVVARRPEAAAALLELGARLSVRVTTAPTDAEAPASVDLTVSTLPGGTTLADETCRRLAAGGGLLYDVVYGHWPTDLARAWEDAGAPAVDGRGMLLHQAVLQIRAFLTGDPEVPLADEVAVVDVMARALVGD*