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berkeley_reactor_200306_biofilm_scaffold_26589_5

Organism: 2019_SCN_bioreactor_200211_biofilm_Singulisphaera_acidiphila_69_8

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: 5261..6556

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIU5_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 44.2
  • Coverage: 387.0
  • Bit_score: 242
  • Evalue 4.80e-61
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49278.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.1
  • Coverage: 411.0
  • Bit_score: 278
  • Evalue 1.10e-71
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 44.2
  • Coverage: 387.0
  • Bit_score: 242
  • Evalue 1.40e-61

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 1296
ATGGCGATCGGTCGGTCGACGGCTGTCCGGCGGCAGCTTCAACTCGTGTTTCGCGCCGGCGCGGCGGGTTCGCTCGGCGACGGGCCGCTGCTCGAACGGTTCCTGAACCGGCAAGAGGGGGCGGACGAGGCGTTCGAAACGTTGATGGCGCGGCACGGGCCGATGGTCCACTCCGTCTGCCGCCAGGTGCTCGGGGCGACCCACGACGCGGACGACGCCTTTCAAGCCACGTTTCTGATCCTCATCCGCCAGGCGCGGGAAGTCCGCCGTCGCGACGCGATCGGAGGCTGGTTGTACGGCGTCGCCCGCCGCGTCGCCCTCCGCGCCCGGTCCGACGCCGCCCGACGCCGGCACCAGGAGCGTCAAGCCGGCGTCGACGAAGCCGCGCCAGAGAACACCGACGCCGAAGACCGGCACAGCCTCCTCGCCCTTCTTTACGAGGAGATCGCGCGGCTCCCGGAAAAGTACCGCGCCCCGGTCGTCCTCTGCGAGTTGGGGGGGCGGACACACGCCGAGGCGGCGAACCAATTGAACTGGCCCGTCGGCACGGTCAGCGGCCGGCTCTCGAGAGCCCGCGACCTGCTCCGCGGCCGGATCGCCCGCCGCGGCCTGACCCTCCCGGCCGGACTGCTCGCGGCCGCCGCCTGGCCCCGGTCGGCCCCCGCGGCGCTGGTCGAAGCGACCGCCCGGACGGCCGTCCGGTTCGTTTCCGACGGCGGCACCCCGTCACCCGCCGCCGCTCTGGCCGTCCGCGTCCTCGCGGCCCGGAGGGTTACCCGGGTCAAGATCGCGGCCGCGCTGGTGCTAACAGCCGGCGTCGCCGCCGGGGGCACACGGTTTGTCCGACTCGACGCGGAGCAAAGCCCGGCCCGGTCCAGCCCCCGTCTCGTCCTTGCGGCCCCGGGCACGCGGCCGGCGGTGCAGTCCAGTCGCGGCGTACCGATCGTCTCGGCCTGGCCCGACGAGGAGGCCACATCGGTCGCCTTCGCCCCTGACGGCAAGACGGTGGCCTCCGGACGTCGCGACGCGACGGTGACGCTCTGGGACGTCGAAACCTTGCACCCCCGCGCCACCCTCCGAGGCCACTCCGCCCCGATCCTCGCCCTCACCTTCTCGCCCGACGGCGACTCGCTCGCCTCGACCGACGCCGACCAGATTCTCAAGGTCTGGGACGTCGCCACCGGCCGCGAGCAGGTTTCCATGACCTGGCTCCCGGCCGCGCCCCCGGCTTCGAACACGGCCGCCGCCCCCGCGCCCGCCCCGGACGACCCCGTGCAGTCCCGGTCCGGCTGTTAG
PROTEIN sequence
Length: 432
MAIGRSTAVRRQLQLVFRAGAAGSLGDGPLLERFLNRQEGADEAFETLMARHGPMVHSVCRQVLGATHDADDAFQATFLILIRQAREVRRRDAIGGWLYGVARRVALRARSDAARRRHQERQAGVDEAAPENTDAEDRHSLLALLYEEIARLPEKYRAPVVLCELGGRTHAEAANQLNWPVGTVSGRLSRARDLLRGRIARRGLTLPAGLLAAAAWPRSAPAALVEATARTAVRFVSDGGTPSPAAALAVRVLAARRVTRVKIAAALVLTAGVAAGGTRFVRLDAEQSPARSSPRLVLAAPGTRPAVQSSRGVPIVSAWPDEEATSVAFAPDGKTVASGRRDATVTLWDVETLHPRATLRGHSAPILALTFSPDGDSLASTDADQILKVWDVATGREQVSMTWLPAAPPASNTAAAPAPAPDDPVQSRSGC*